View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4653-Insertion-10 (Length: 700)
Name: NF4653-Insertion-10
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-10 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 607; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 9 - 700
Target Start/End: Original strand, 26202919 - 26203609
Alignment:
| Q |
9 |
catcagcatcaacataagttagatgatctaaatgtcaataacgtacaannnnnnnnccttaattcaactaaaattattttcagcaatctaaagctgttat |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26202919 |
catcaacatcaacataagttagatgatctaaatgtcaataacgtacaaattattttccttaattcaactaaaattattttcagcaatctaaagctgttat |
26203018 |
T |
|
| Q |
109 |
ttaaaagctagtagcatagccacaaaatgatgatcataaagtggcttctgattgatggccataaagccctagctagcacgccttctaggagccgttgccc |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26203019 |
ttaaa-gctagtagcatagccacaaaatgatgatcataaagtggcttctgattgatggccataaagccctagctagcacgccttctaggagccgttgccc |
26203117 |
T |
|
| Q |
209 |
ttcttgcattgaaatatgcagcagcaacagggacaccaaggtcattttgagcagaaaaggcacgtgtgttaaagtgatcccttgaaaaaggtgcaacaat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26203118 |
ttcttgcattgaaatatgcagcagcaacagggacaccaaggtcattttgagcagaaaaggcacgtgtgttaaagtgatcccttgaaaaaggagcaacaat |
26203217 |
T |
|
| Q |
309 |
tgagtgcttcttcatcnnnnnnngcttgaataggacaaacacatatctgtggattcctatattaggctttggtttttcatagcttgtcaattctttgcct |
408 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26203218 |
tgagtgcttcttccccttttcttgcttgaataggacaaacacatatctgtggattcctatattaggctttggtttttcatagcttgtcaattctttgcct |
26203317 |
T |
|
| Q |
409 |
gtttagtagtatcagtgtcccaaaatacaactataggggtcagtgttttttctttctttcaacaagtacatgattaattcaaaatgcagttttatttgat |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26203318 |
gtttagtagtatcagtgtcccaaaatacaactataggggtcagtgttttttctttctttcaacaagtacatgattaattcaaagtgcagttttatttgat |
26203417 |
T |
|
| Q |
509 |
tattcatatcagtaaatcaatgtaatctataaacctaccaaatgtggaatctgtggtccctggaatgtctgtcaccatcctgtaaaaggacattattatt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26203418 |
tattcatatcagtaaatcaatgtaatctataaacctaccaaatgtggaatctgtggtccctggaatgtctgtcaccatcctgtaaaaggacatttttatc |
26203517 |
T |
|
| Q |
609 |
aaccaaaattggatatattgttaactacaatatgtaccttcataatctgattcattagtgttattacaccatattcaaggtattgtctttga |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26203518 |
aaccaaaattggatatattgttaactacaatatgtaccttcataatctgattcattagtattattacaccatattcaaggtattgtctttga |
26203609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 26196139 - 26196287
Alignment:
| Q |
74 |
aactaaaattattttcagcaatctaaagctgttatttaaaagctagtagcatagccacaaaatgatgatcataaagtggcttctgattgatggccataaa |
173 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| || ||||| | |||||| | ||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
26196139 |
aactaaaattaacttcagcaagctaaagctgttatttcaa-gctagcat-atagcctcgaaatgatgatcatgtagtggcttctgattgatggccatata |
26196236 |
T |
|
| Q |
174 |
gccctagctagcacgccttctaggagccgttgcccttcttgcattgaaata |
224 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26196237 |
gctctagatagcacgccttctaggagccgttgcccttcttgcattgaaata |
26196287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 539 - 667
Target Start/End: Original strand, 26196456 - 26196588
Alignment:
| Q |
539 |
aaacctaccaaatgtggaatctgtggtccctggaatgtctgtcaccatcctgtaaaaggacatt----attattaaccaaaattggatatattgttaact |
634 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| || |||| |||||||||||||||||||||||| | |
|
|
| T |
26196456 |
aaacctaccaaatgtggaatctgttgtccctggaatgtctgtcaccatcctgcaaaatgactttttaatttatcaaccaaaattggatatattgttaatt |
26196555 |
T |
|
| Q |
635 |
acaatatgtaccttcataatctgattcattagt |
667 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| |
|
|
| T |
26196556 |
acaatatctaccttcaaaatctgattcattagt |
26196588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 477
Target Start/End: Original strand, 26196333 - 26196381
Alignment:
| Q |
429 |
caaaatacaactataggggtcagtgttttttctttctttcaacaagtac |
477 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
26196333 |
caaaatattactatagggctcagtgtattttctttctttcaacaagtac |
26196381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University