View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653-Insertion-11 (Length: 612)
Name: NF4653-Insertion-11
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 11 - 612
Target Start/End: Complemental strand, 31999149 - 31998548
Alignment:
| Q |
11 |
ggattagacggaagtaggcgctatccttgttacatgtaggatcctaattggtttatgtaacaactcttgtgtggagttttctaggcagtcaatgcaattt |
110 |
Q |
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| T |
31999149 |
ggattagacggaagtaggcgctattcttgttgcatgtaggagcctaattggtttatgtaacaactcttgtgtggagttttctaggcagtcaatgcaattt |
31999050 |
T |
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| Q |
111 |
ctcatctttattgtgatgtttcaacatgtattgatcatttgatctttaattatatgaattagttttcctcttgtaaaacaactatatttaaaaatcgtct |
210 |
Q |
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| T |
31999049 |
ctcatctttattgtgatgtttcaacatgtattgatcatttgatctttaattatatgaattagttttcctcttgtaaaacaactatatttaaaaatcgtct |
31998950 |
T |
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| Q |
211 |
aaaattctaatgatgattgatgttatcctctataagtagaaactctgatccacgtcctcatcgttcagatagtgacatgatatgtgccggttagacaaaa |
310 |
Q |
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| T |
31998949 |
aaaattctaatgatgatcgatgttatcctctataagtagaaactctgatccacgtcctcatcgttcagatagtgacatgatatgtgccggttagacaaaa |
31998850 |
T |
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| Q |
311 |
acaaaccagatagatattaatttatcaaaatcttttatttatttctttttgttttaatcaagctgtgacaatacaaattatatcaacatttagttgtgta |
410 |
Q |
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| T |
31998849 |
acaaaccagatagatattaatttctcaaaatcttttattaatttctttttgttttaatcaagctgtgacaacacaaattatatcaacatttagttgtgta |
31998750 |
T |
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| Q |
411 |
atcaaagagaccagagaatacaatttaccacaatttctagcaattcctacaaaactatgagcaactctattgttacatctcttaacataaattaaactaa |
510 |
Q |
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| T |
31998749 |
atcaaagagaccagagaatacaatttaccacaatttctagcaattcctacaaaactatgagcaactctattgttacatcacttaacataaattaaactaa |
31998650 |
T |
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| Q |
511 |
cattagacatactgaacaacaattcatgacagtcagacacgacaatatccttgtactccagcttagttttcccaagcacgcagttcacaaacatttggca |
610 |
Q |
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| T |
31998649 |
cattagacatactgaacaacaattcatgacagtcaaacacgacaatatccttgtactccagcttagttttcccaagcacgcagttcacaaacatttggca |
31998550 |
T |
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| Q |
611 |
ta |
612 |
Q |
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| T |
31998549 |
ta |
31998548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 436 - 545
Target Start/End: Complemental strand, 42613200 - 42613096
Alignment:
| Q |
436 |
taccacaatttctagcaattcctacaaaactatgagcaactctattgttacatctcttaacataaattaaactaacattagacatactgaacaacaattc |
535 |
Q |
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||||||| ||||||||||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||||||||| | |||||| |
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| T |
42613200 |
taccacagtttctagcaattcctaccaacc-atgagcagctctactgttacatctctta----aacataaactaacattagacatactgaatatcaattc |
42613106 |
T |
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| Q |
536 |
atgacagtca |
545 |
Q |
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| T |
42613105 |
aagtcagtca |
42613096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 17231882 - 17231961
Alignment:
| Q |
109 |
ttctcatctttattgtgatgtttcaacatgtattgatcatttgatctttaattatatgaattagttttcctcttgtaaaa |
188 |
Q |
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| T |
17231882 |
ttctcatctttattatgatattccaacatatattaataacttgatcatcaatgataggaattagttttcctcttgtaaaa |
17231961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 44773688 - 44773620
Alignment:
| Q |
109 |
ttctcatctttattgtgatgtttcaacatgtattgatcatttgatctttaattatatgaattagttttc |
177 |
Q |
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| T |
44773688 |
ttctcatatttattatgatgttctatcatgtattgaccgtttgatttttaatgaaatgaattagttttc |
44773620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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