View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653-Insertion-13 (Length: 576)
Name: NF4653-Insertion-13
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Complemental strand, 29008832 - 29008264
Alignment:
| Q |
8 |
ataattgtcttagattcattcatataatttgtctacattggtgttctattttcaatggtgggacggtgccactgtctactagctaggtgggaagtgggtc |
107 |
Q |
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| T |
29008832 |
ataattgtcttagattcattcatataatttgtctacattggtgttctattttcaatggtgggacggtgccactgtctactagctaggtgggaagtgggtc |
29008733 |
T |
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| Q |
108 |
caacaaaaaatgctggcatatcaagaatgtggnnnnnnncaaaagctacattaacagaagaaaatctagaacttatctagaaacaacttacgactaaagt |
207 |
Q |
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| T |
29008732 |
caacaaaaaatgctggcatatcaagaatgtggaaaaaaacaaaagctacattaacaaaagaaaatctagaacttatctagaaacaacttataactaaagt |
29008633 |
T |
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| Q |
208 |
aaagctacaaaaaagtggtttaaatgtctaacctcttgtattcaatgtcaacaatgccaagtttcaatatctgttggctcatacccttttgagccatagc |
307 |
Q |
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| T |
29008632 |
aaagctacaaaaaagtggtttaaatgtcttacctcttgtattcaatgtcaacaatgccaagtttcaatatctgttggctcatacccttttgagccatagc |
29008533 |
T |
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| Q |
308 |
tgtaaaggctctactgcttaggacaaaatcagtttgattattgtgattaagatcagttaataccactttggtaccttcttttgtgcatatagcttggttc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29008532 |
tgtaaaggctctactgcttaggacaaaatcagtttgattattgtgattaagatcagttaataccactttggtaccttcttttgtgcatatagcttggttc |
29008433 |
T |
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| Q |
408 |
ttgcatcttacctgcatcaaattgttcattaatttaattaaaacaaaagtttcatgacatcaataaaaagatatatttaatttcgctaaatgtcagcgta |
507 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29008432 |
ttgcatcttacctgcatcaaattgttcattaatttcattaaaacaaaagtttcatgacatcaat-aaaagatatatttaatttcgctaaatgtcagcgta |
29008334 |
T |
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| Q |
508 |
gtttt-aaattgcggacgcaatgcaaagatttaggtgacttttataattgtattgcgtccgcatgattaa |
576 |
Q |
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| T |
29008333 |
gttttaaaattgcggacgcaatgcaaagattctggtgacttttataattgtattgcgtccgcatgattaa |
29008264 |
T |
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