View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4653-Insertion-14 (Length: 558)

Name: NF4653-Insertion-14
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4653-Insertion-14
NF4653-Insertion-14
[»] chr7 (9 HSPs)
chr7 (347-555)||(39266690-39266898)
chr7 (150-267)||(3845604-3845721)
chr7 (284-349)||(85299-85364)
chr7 (284-349)||(39444985-39445050)
chr7 (288-349)||(40722602-40722663)
chr7 (309-349)||(48829730-48829770)
chr7 (347-385)||(48846906-48846944)
chr7 (283-328)||(23485479-23485524)
chr7 (284-328)||(24764953-24764998)
[»] chr5 (3 HSPs)
chr5 (348-520)||(24118451-24118625)
chr5 (284-349)||(29656927-29656992)
chr5 (283-345)||(10647734-10647797)
[»] chr4 (6 HSPs)
chr4 (348-477)||(19514460-19514590)
chr4 (283-349)||(56478922-56478988)
chr4 (288-349)||(16032628-16032689)
chr4 (284-349)||(6980520-6980585)
chr4 (284-328)||(37342028-37342072)
chr4 (283-328)||(1663574-1663620)
[»] chr2 (8 HSPs)
chr2 (347-552)||(28000685-28000891)
chr2 (288-349)||(12447183-12447244)
chr2 (284-349)||(43800427-43800492)
chr2 (283-349)||(9059885-9059951)
chr2 (284-328)||(25890498-25890542)
chr2 (347-413)||(41579265-41579331)
chr2 (347-413)||(39356683-39356750)
chr2 (283-328)||(4814602-4814647)
[»] chr3 (11 HSPs)
chr3 (283-349)||(41828186-41828252)
chr3 (283-349)||(54418906-54418972)
chr3 (285-349)||(14175721-14175785)
chr3 (284-331)||(953057-953104)
chr3 (281-347)||(41828007-41828074)
chr3 (347-413)||(43808759-43808825)
chr3 (347-414)||(19468815-19468882)
chr3 (284-345)||(9640246-9640308)
chr3 (284-349)||(48760984-48761050)
chr3 (284-345)||(48761239-48761301)
chr3 (285-345)||(48760757-48760818)
[»] chr1 (8 HSPs)
chr1 (283-349)||(23260952-23261018)
chr1 (283-349)||(42772457-42772523)
chr1 (285-349)||(47914613-47914677)
chr1 (297-349)||(51854523-51854575)
chr1 (299-349)||(28238202-28238252)
chr1 (347-423)||(38505968-38506044)
chr1 (347-413)||(22370311-22370377)
chr1 (285-345)||(10893924-10893985)
[»] scaffold0007 (2 HSPs)
scaffold0007 (348-480)||(35669-35802)
scaffold0007 (348-480)||(40982-41115)
[»] chr6 (4 HSPs)
chr6 (284-349)||(29535404-29535469)
chr6 (283-348)||(29535871-29535936)
chr6 (284-349)||(29535634-29535699)
chr6 (284-345)||(5168955-5169017)
[»] scaffold1598 (1 HSPs)
scaffold1598 (284-345)||(176-238)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 347 - 555
Target Start/End: Complemental strand, 39266898 - 39266690
Alignment:
Q  347 tgcttattaggtcttgctatcatttaacctaatttttccttttaataatccttcattaattgctaatggtcacttaaacctaaaattttccctcctccta 446  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39266898 tgcttattaggtcttgctatcatttaacctaatttttccctctaataatccttcattaattgctaatggtcacttaagcctaaaattttccctcctccta 39266799  T
Q  447 tatgccaaatttgaaattcaaatactgatggttttgtttttcctaaaatccgcgtaccaataagtgttgtttttatttttatttcaattccaatgtgctc 546  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39266798 tatgccaaatttgaaattcaaatactgatggttttgtttttcataaaatcaacgtaccaataagtgttgtttttatttttatttcaattccaatgtgctc 39266699  T
Q  547 atttgactg 555  Q
    |||||||||    
T  39266698 atttgactg 39266690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 150 - 267
Target Start/End: Complemental strand, 3845721 - 3845604
Alignment:
Q  150 attctctttcaattatctaattcaaagaggatgaatagcagttcaattattataattaccatgtctcataagattttcaaagtccgcaataaaatgattg 249  Q
    ||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3845721 attctcttttaattctctaattcaaagaggatgaatagcagttcagttattataattaccatgtctcataagattttcaaagtccgcaataaaatgatta 3845622  T
Q  250 tagtaccaaggatgcttt 267  Q
    ||||||||||||||||||    
T  3845621 tagtaccaaggatgcttt 3845604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 85364 - 85299
Alignment:
Q  284 atcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  85364 atcccttactccttaatcttattaggttgcaacaacttaaccctagaattttggctccaaaattgc 85299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 39444985 - 39445050
Alignment:
Q  284 atcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  39444985 atcccttactctttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgc 39445050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 40722602 - 40722663
Alignment:
Q  288 cttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||||| ||| || ||||||||||||||||||||||||||| |||| ||||||||||||    
T  40722602 cttactcctaaattttattaggttgcaacaacttaaccctagaaatttggctccaaaattgc 40722663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 48829730 - 48829770
Alignment:
Q  309 gttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  48829730 gttgcaacaacttaaccctagaaatttggctccaaaattgc 48829770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 48846944 - 48846906
Alignment:
Q  347 tgcttattaggtcttgctatcatttaacctaatttttcc 385  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  48846944 tgcttattaggtcttgctatagtttaacctaatttttcc 48846906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 23485479 - 23485524
Alignment:
Q  283 tatcccttactccttaatcttgttaggttgcaacaacttaacccta 328  Q
    |||||||||||||||||| || |||||||||||  |||||||||||    
T  23485479 tatcccttactccttaattttattaggttgcaaacacttaacccta 23485524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 24764953 - 24764998
Alignment:
Q  284 atcccttactccttaatcttgttaggtt-gcaacaacttaacccta 328  Q
    ||||||||||||||||  |||||||||| |||||||||||||||||    
T  24764953 atcccttactccttaaagttgttaggttagcaacaacttaacccta 24764998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 348 - 520
Target Start/End: Original strand, 24118451 - 24118625
Alignment:
Q  348 gcttattaggtcttgctatcatttaacctaatttttccttttaataatccttcattaattgctaatggtcacttaaaccta-aaattttccctcctccta 446  Q
    |||||| ||||||||| | | ||||||||||||||||| | |||||| |||||||||||||||||||||| ||||| | || ||||||||||||||| |     
T  24118451 gcttataaggtcttgcaaccttttaacctaatttttccctctaataaaccttcattaattgctaatggtcccttaaccttacaaattttccctcctcttc 24118550  T
Q  447 tatgccaaatttgaaattcaaatactgatggttttgtttttcctaa-aatccgcgtaccaataagtgttgttttt 520  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||||| |||||| |||   |||||||||| ||||    
T  24118551 tatgcctaatttgaaattcaaatactgatggtttagttttccctaataatccgtgtatagataagtgttggtttt 24118625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 29656992 - 29656927
Alignment:
Q  284 atcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| || |||| ||||||||||||    
T  29656992 atcccttactctttaatcttattaggttgcaacaacttaaccctataaatttggctccaaaattgc 29656927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 10647797 - 10647734
Alignment:
Q  283 tatcccttactccttaatcttgttaggtt-gcaacaacttaaccctagaattttgcctccaaaa 345  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||| | ||||| ||| ||||    
T  10647797 tatcccttactccttaaagttgttaggttagcaacaacttaaccctaaatttttggctctaaaa 10647734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 348 - 477
Target Start/End: Original strand, 19514460 - 19514590
Alignment:
Q  348 gcttattaggtcttgctatcatttaacctaatttttccttttaataatccttcattaattgctaatggtcacttaaaccta-aaattttccctcctccta 446  Q
    |||||| ||||||||| | | ||||||||||||||||| | |||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||| |     
T  19514460 gcttataaggtcttgcaaccttttaacctaatttttccctctaataaaccttcattaattgctaatggtcccttaaccctacaaattttccctcctcttc 19514559  T
Q  447 tatgccaaatttgaaattcaaatactgatgg 477  Q
    |||||| |||||||||||||||| |||||||    
T  19514560 tatgcctaatttgaaattcaaatgctgatgg 19514590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 349
Target Start/End: Complemental strand, 56478988 - 56478922
Alignment:
Q  283 tatcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  56478988 tatcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgc 56478922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 16032689 - 16032628
Alignment:
Q  288 cttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  16032689 cttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgc 16032628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 6980520 - 6980585
Alignment:
Q  284 atcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    |||||||||||||||||||| |||||||||||||| |||||| || || |||| ||||||| ||||    
T  6980520 atcccttactccttaatcttattaggttgcaacaatttaaccttaaaaatttggctccaaagttgc 6980585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 37342072 - 37342028
Alignment:
Q  284 atcccttactccttaatcttgttaggttgcaacaacttaacccta 328  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||    
T  37342072 atcccttactcattaatcttattaggttgcaataacttaacccta 37342028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 1663620 - 1663574
Alignment:
Q  283 tatcccttactccttaatcttgttaggtt-gcaacaacttaacccta 328  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||    
T  1663620 tatcccttactccttaaagttgttaggttagcaacaacttaacccta 1663574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 347 - 552
Target Start/End: Original strand, 28000685 - 28000891
Alignment:
Q  347 tgcttattaggtcttgctatcatttaacctaatttttccttttaataatccttcattaattgctaatggtcacttaaaccta-aaattttccctcctcct 445  Q
    ||||| ||||||| |||||||||| | |||||||||||| |  ||||| | ||||||||||||||||| || || || |||  ||||||||||||||| |    
T  28000685 tgcttgttaggtcatgctatcattaaccctaatttttccctcaaataacctttcattaattgctaatgatccctcaatcctgcaaattttccctcctctt 28000784  T
Q  446 atatgccaaatttgaaattcaaata-ctgatggttttgtttttcc-taaaatccgcgtaccaataagtgttgtttttatttttatttcaattccaatgtg 543  Q
     ||||||  ||||||||||||||   |||||||||  || ||||| |||||||||| || |||||||||||| ||| |||||||||| |||| ||||||     
T  28000785 ctatgccccatttgaaattcaaaagtctgatggtt--gtatttccataaaatccgcctatcaataagtgttggtttgatttttatttaaatttcaatgta 28000882  T
Q  544 ctcatttga 552  Q
    |||||||||    
T  28000883 ctcatttga 28000891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 12447244 - 12447183
Alignment:
Q  288 cttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  12447244 cttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgc 12447183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 43800492 - 43800427
Alignment:
Q  284 atcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||    
T  43800492 atcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttgactccgaaattgc 43800427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 349
Target Start/End: Complemental strand, 9059951 - 9059885
Alignment:
Q  283 tatcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| || |||| ||| ||||||||    
T  9059951 tatcccttactccttaatcttattaggttgcaacaacttaaccctaaaaatttgactctaaaattgc 9059885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 25890542 - 25890498
Alignment:
Q  284 atcccttactccttaatcttgttaggttgcaacaacttaacccta 328  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  25890542 atcccttactccttaatcttattaggttgcaacaacttaacccta 25890498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 41579265 - 41579331
Alignment:
Q  347 tgcttattaggtcttgctatcatttaacctaatttttccttttaataatccttcattaattgctaat 413  Q
    ||||||||||||| |||||||||| | |||||||||||| | |||||| |  |||||||||||||||    
T  41579265 tgcttattaggtcatgctatcattaaccctaatttttccctctaataacctgtcattaattgctaat 41579331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 39356683 - 39356750
Alignment:
Q  347 tgcttattaggtcttgct-atcatttaacctaatttttccttttaataatccttcattaattgctaat 413  Q
    |||||||||||||| ||| |||| | |||||||||||||| | ||||||||  |||||||||||||||    
T  39356683 tgcttattaggtctagcttatcactaaacctaatttttccctctaataatctgtcattaattgctaat 39356750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 4814602 - 4814647
Alignment:
Q  283 tatcccttactccttaatcttgttaggttgcaacaacttaacccta 328  Q
    |||||||||||||||||| || |||||||||||  |||||||||||    
T  4814602 tatcccttactccttaattttattaggttgcaaacacttaacccta 4814647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 41828186 - 41828252
Alignment:
Q  283 tatcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  41828186 tatcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgc 41828252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 54418906 - 54418972
Alignment:
Q  283 tatcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  54418906 tatcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgc 54418972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 14175785 - 14175721
Alignment:
Q  285 tcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  14175785 tcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgc 14175721  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 953104 - 953057
Alignment:
Q  284 atcccttactccttaatcttgttaggttgcaacaacttaaccctagaa 331  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  953104 atcccttactccttaatcttattaggttgcaacaacttaaccctagaa 953057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 41828007 - 41828074
Alignment:
Q  281 agtatcccttactccttaatcttgttaggttgcaacaactt-aaccctagaattttgcctccaaaatt 347  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||||| || |||| ||||||||||    
T  41828007 agtattccttactccttaatcttattaggttgcaacaacttaaaccctaaaaatttggctccaaaatt 41828074  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 43808825 - 43808759
Alignment:
Q  347 tgcttattaggtcttgctatcatttaacctaatttttccttttaataatccttcattaattgctaat 413  Q
    ||||||||||||| |||||||||| | |||||||||||| | |||||| |  |||||||||||||||    
T  43808825 tgcttattaggtcatgctatcattaaccctaatttttccctctaataagctgtcattaattgctaat 43808759  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 414
Target Start/End: Original strand, 19468815 - 19468882
Alignment:
Q  347 tgcttattaggtcttgctatcatttaacctaatttttccttttaataatccttcattaattgctaatg 414  Q
    ||||||||||||||||| | || | |||||||||||||| | || |||||  ||||||||||||||||    
T  19468815 tgcttattaggtcttgcaagcactaaacctaatttttccctctactaatctgtcattaattgctaatg 19468882  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 9640246 - 9640308
Alignment:
Q  284 atcccttactccttaatcttgttaggtt-gcaacaacttaaccctagaattttgcctccaaaa 345  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||| | ||||| ||| ||||    
T  9640246 atcccttactccttaaagttgttaggttagcaacaacttaaccctaaatttttggctctaaaa 9640308  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 48760984 - 48761050
Alignment:
Q  284 atcccttactccttaatcttgttaggtt-gcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||| ||||||||  |||||||||| ||||||||||||||||| | ||||| ||| ||||||||    
T  48760984 atcccttgctccttaaagttgttaggttagcaacaacttaaccctaaatttttgactctaaaattgc 48761050  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 48761239 - 48761301
Alignment:
Q  284 atcccttactccttaatcttgttaggtt-gcaacaacttaaccctagaattttgcctccaaaa 345  Q
    ||||||||||||||||  |||||||||| ||||||| ||||||||| | ||||||||| ||||    
T  48761239 atcccttactccttaaagttgttaggttagcaacaatttaaccctaaatttttgcctctaaaa 48761301  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 48760757 - 48760818
Alignment:
Q  285 tcccttactccttaatcttgttaggtt-gcaacaacttaaccctagaattttgcctccaaaa 345  Q
    ||||||||||||||   |||||||||| ||||||||||||||||| ||||||| ||| ||||    
T  48760757 tcccttactccttagagttgttaggttagcaacaacttaaccctaaaattttggctctaaaa 48760818  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 23260952 - 23261018
Alignment:
Q  283 tatcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  23260952 tatcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgc 23261018  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 42772457 - 42772523
Alignment:
Q  283 tatcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  42772457 tatcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgc 42772523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 47914677 - 47914613
Alignment:
Q  285 tcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||    
T  47914677 tcccttactccttaatcttattaggttgcaacaacttaaccttagaaatttggctccaaaattgc 47914613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 51854575 - 51854523
Alignment:
Q  297 taatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||||| ||||||||||||||||||||||||||| |||| |||||| |||||    
T  51854575 taatcttattaggttgcaacaacttaaccctagaaatttggctccaagattgc 51854523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 28238252 - 28238202
Alignment:
Q  299 atcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    ||||| ||||||||||||||||||||| ||||| |||| ||||||||||||    
T  28238252 atcttattaggttgcaacaacttaaccttagaaatttggctccaaaattgc 28238202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 38505968 - 38506044
Alignment:
Q  347 tgcttattaggtcttgctatcatttaacctaatttttccttttaataatccttcattaattgctaatggtcacttaa 423  Q
    ||||||||||||| ||||| || ||||||||| |||||| | |||||||| | ||||||||| || | |||||||||    
T  38505968 tgcttattaggtcatgctaccacttaacctaaattttccctctaataatcttgcattaattgttattagtcacttaa 38506044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 22370311 - 22370377
Alignment:
Q  347 tgcttattaggtcttgctatcatttaacctaatttttccttttaataatccttcattaattgctaat 413  Q
    ||||||||||||| | |||||||| | |||||||||||| | |||||| |  |||||||||||||||    
T  22370311 tgcttattaggtcatactatcattaaccctaatttttccctctaataagctgtcattaattgctaat 22370377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 10893985 - 10893924
Alignment:
Q  285 tcccttactccttaatcttgttaggtt-gcaacaacttaaccctagaattttgcctccaaaa 345  Q
    |||||||||||||||  |||||||||| ||||||||||||||||| | ||||| ||| ||||    
T  10893985 tcccttactccttaaagttgttaggttggcaacaacttaaccctaaatttttggctctaaaa 10893924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 348 - 480
Target Start/End: Original strand, 35669 - 35802
Alignment:
Q  348 gcttattaggtcttgctatcatttaacctaatttttccttttaataatccttcattaattgctaatggtcacttaaacctaaaatttt-ccctcctccta 446  Q
    |||||| ||||||||| | | |||||| |||||||||| | ||||||  |||||||| |||||||||||| ||||| | || |||||| |||||||| |     
T  35669 gcttataaggtcttgcaaccttttaacataatttttccctctaataaagcttcattatttgctaatggtcccttaaccttacaatttttccctcctcttc 35768  T
Q  447 tatgccaaatttgaaattcaaatactgatggttt 480  Q
    |||||| ||||||||||||||||| |||||||||    
T  35769 tatgcctaatttgaaattcaaatagtgatggttt 35802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 348 - 480
Target Start/End: Original strand, 40982 - 41115
Alignment:
Q  348 gcttattaggtcttgctatcatttaacctaatttttccttttaataatccttcattaattgctaatggtcacttaaacctaaaatttt-ccctcctccta 446  Q
    |||||| ||||||||| | | |||||| |||||||||| | ||||||  |||||||| |||||||||||| ||||| | || |||||| |||||||| |     
T  40982 gcttataaggtcttgcaaccttttaacataatttttccctctaataaagcttcattatttgctaatggtcccttaaccttacaatttttccctcctcttc 41081  T
Q  447 tatgccaaatttgaaattcaaatactgatggttt 480  Q
    |||||| ||||||||||||||||| |||||||||    
T  41082 tatgcctaatttgaaattcaaatagtgatggttt 41115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 29535469 - 29535404
Alignment:
Q  284 atcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    |||||||||||||||||||| |||||||||||||||||||||||| || |||| ||||||||||||    
T  29535469 atcccttactccttaatcttattaggttgcaacaacttaaccctataaatttggctccaaaattgc 29535404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 29535936 - 29535871
Alignment:
Q  283 tatcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattg 348  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||    
T  29535936 tatcccttactccttaatcttattaggttgcaacaatttaaccctagaaatttggctccaaaattg 29535871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 29535699 - 29535634
Alignment:
Q  284 atcccttactccttaatcttgttaggttgcaacaacttaaccctagaattttgcctccaaaattgc 349  Q
    |||||||||||||||||||| |||||||||||||||||||||||| || |||| || |||||||||    
T  29535699 atcccttactccttaatcttattaggttgcaacaacttaaccctataaatttggcttcaaaattgc 29535634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 5168955 - 5169017
Alignment:
Q  284 atcccttactccttaatcttgttaggtt-gcaacaacttaaccctagaattttgcctccaaaa 345  Q
    ||||||||||||||||  |||||||||| ||||||| ||||||||| | ||||||||| ||||    
T  5168955 atcccttactccttaaagttgttaggttagcaacaatttaaccctaaatttttgcctctaaaa 5169017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1598 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1598
Description:

Target: scaffold1598; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 176 - 238
Alignment:
Q  284 atcccttactccttaatcttgttaggtt-gcaacaacttaaccctagaattttgcctccaaaa 345  Q
    ||||||||||||||||  |||||||||| ||||||| ||||||||| | ||||||||| ||||    
T  176 atcccttactccttaaagttgttaggttagcaacaatttaaccctaaatttttgcctctaaaa 238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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