View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4653-Insertion-15 (Length: 542)
Name: NF4653-Insertion-15
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 3938704 - 3939071
Alignment:
| Q |
8 |
ccaagaaatggaaccaactatggctctcacttctcaatcttgattttgacgaccaaggctctccaaacttcttagcttttcgacattttgtctacttagt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3938704 |
ccaagaaatggaaccaactatggctctcagttctcactcttgattttgacgaccaaggctctccaaacttcttagcttttcgacattttgtctacttagt |
3938803 |
T |
|
| Q |
108 |
catgctcatgcgtgacgcttccttgcccatccgatcattccgtctcaaatgtggcttcattcaaatatgtgatccatatgatatcaatcgattcatttct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3938804 |
catgctcatgcgtgacgcttccttgcccatccgatcattcc------------------ttcaaagatgtgatccatatgatatcaatcgattcatttct |
3938885 |
T |
|
| Q |
208 |
gttgctgtaaaacgaggaattgataatcttaccttaccttagacttgtctggcactgatgatgattttcaaatccgattggatcctataatttccactgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3938886 |
gttgctgtaaaacgaggaattgataatctta-----ccttagacttgtctggcactgatgatgattttcaaatccgattggatcctataatttccactgt |
3938980 |
T |
|
| Q |
308 |
ttttaattgcaggaaccttgtggttctcaagttgaagtcactgaaaatgtatatctgtcctcagttagattttcccctactcaaaactctc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3938981 |
ttttaattgcaggaaccttgtggttctcaagttgaagtcactgaaaatgtatatctgtcctcagttagattttcccctactcaaaactctc |
3939071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 3939321 - 3939404
Alignment:
| Q |
459 |
ttcgttttgaactggtatgagtgtcacttctcactagctaaatttacaataattgtcaaacttcactttaaattctaatgtttg |
542 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3939321 |
ttcgttttggtctggtatgagtgtcacttctcactagctaaagttacaataattgtcaaacttcactttaaattctaatgtttg |
3939404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 12651704 - 12651782
Alignment:
| Q |
83 |
cttttcgacattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattccgtctcaaatgtgg |
161 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||||| | ||| ||| |||| ||| ||||| ||||||||||| |
|
|
| T |
12651704 |
cttttcgactttttgtctactcagtcatgctcacgcgtgacccaacctcgccaatccaatcgttccgactcaaatgtgg |
12651782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 12504948 - 12505027
Alignment:
| Q |
82 |
gcttttcgacattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattccgtctcaaatgtgg |
161 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||| |||||| | | ||||||||||||| |||| ||||||||||| |
|
|
| T |
12504948 |
gcttttcgacttttcgtctactcagtcatgctcatccgtgaccccacattgcccatccgattgttccacctcaaatgtgg |
12505027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 12485932 - 12485994
Alignment:
| Q |
174 |
atgtgatccatatgatatcaatcgattcatttctgttgctgtaaaacgaggaattgataatct |
236 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||||||| ||| ||||||||| ||||| |
|
|
| T |
12485932 |
atgtgatccacatgatatcaatcgatttgttcctgttgctgtcaaaaaaggaattgagaatct |
12485994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 12507364 - 12507426
Alignment:
| Q |
174 |
atgtgatccatatgatatcaatcgattcatttctgttgctgtaaaacgaggaattgataatct |
236 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||||||| ||| ||||||||| ||||| |
|
|
| T |
12507364 |
atgtgatccacatgatatcaatcgatttgttcctgttgctgtcaaaaaaggaattgagaatct |
12507426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 12658250 - 12658312
Alignment:
| Q |
174 |
atgtgatccatatgatatcaatcgattcatttctgttgctgtaaaacgaggaattgataatct |
236 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||||||| ||| ||||||||| ||||| |
|
|
| T |
12658250 |
atgtgatccacatgatatcaatcgatttgttcctgttgctgtcaaaaaaggaattgagaatct |
12658312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University