View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653-Insertion-17 (Length: 480)
Name: NF4653-Insertion-17
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-17 |
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Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 6 - 470
Target Start/End: Original strand, 8424968 - 8425432
Alignment:
| Q |
6 |
catatattacacgtattatggtagttctgatctgagtaatttagagattgaggtcaagaaaattttcaatttgatggtcacaagtctttctcgcataaac |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8424968 |
catatattacacgtattatggtagttctgatctgagtaatttagagattgaggtcaagaaaattttcaatttgatggtcacaagtctttctcgcataaac |
8425067 |
T |
|
| Q |
106 |
tagtcccgtcatactatttgttaaaggatttggaaaaaatttatgcaggggctacaaatcgtccccaagagcttgatgaagctgcacggaggagacttac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425068 |
tagtcccgtcatactatttgttaaaggatttggaaaaaatttatgcaggggcaacaaatcgtccccaagagcttgatgaagctgcacggaggagacttac |
8425167 |
T |
|
| Q |
206 |
taaacgactgtacattcccctaccatcctcaggtgctaatcataattcttcatctttctataaacccttttaagcacaccatctaactaacacatttgct |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425168 |
taaacgactgtacattcccctaccatcctcaggtgctaatcatgattcttcatctttctataaacccttttaagcacaccatctaactaacacatttgct |
8425267 |
T |
|
| Q |
306 |
tggtattttagaggcaagagcttggatcgcacgtagccttttagagaaggatggattattcaagctatcaaatgaggaaattgatattatatgcaactta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425268 |
tggtattttagaggcaagagcttggatcgcacgtagccttttagagaaggatggattattcaagctatcaaatgaggaaattgatattatatgcaactta |
8425367 |
T |
|
| Q |
406 |
accgaaggtatagacattattcccgataattacaggatcttctgcataatagtttctttttctag |
470 |
Q |
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| T |
8425368 |
accgaaggtatagacattattcccgataattacaggatcttctgcataatagtttctttttctag |
8425432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 141 - 445
Target Start/End: Complemental strand, 8392473 - 8392169
Alignment:
| Q |
141 |
aaaatttatgcaggggctacaaatcgtccccaagagcttgatgaagctgcacggaggagacttactaaacgactgtacattcccctaccatcctcaggtg |
240 |
Q |
| |
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||||||||| |||| || ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8392473 |
aaaatttatacaggtgcaacaaatcgtccccaagatcttgatgaagcagcacgaaggagacttactaaacgactatacattcccctaccatcctcaggtg |
8392374 |
T |
|
| Q |
241 |
ctaatcataattcttcatctttctataaacccttttaagcacaccatctaactaacacatttgcttggtattttagaggcaagagcttggatcgcacgta |
340 |
Q |
| |
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|||| ||| || || |||||||||| ||||||||||||||||||| |||||||||| |||| |||||||||| ||| |||||||||||||| ||||||| |
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| T |
8392373 |
ctaaccatgatcctccatctttctacaaacccttttaagcacaccgtctaactaacttatttacttggtatttcagacgcaagagcttggattgcacgta |
8392274 |
T |
|
| Q |
341 |
gccttttagagaaggatggattattcaagctatcaaatgaggaaattgatattatatgcaacttaaccgaaggtatagacattattcccgataattacag |
440 |
Q |
| |
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|||||||||||||||| | |||||||||||||||| |||||||| || |||||||| ||||||| |||||||| |||||||| || | ||||||||| |
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| T |
8392273 |
atcttttagagaaggatgaactattcaagctatcaaacgaggaaatggagattatatgtgacttaacggaaggtattgacattatgccagttaattacag |
8392174 |
T |
|
| Q |
441 |
gatct |
445 |
Q |
| |
|
|||| |
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|
| T |
8392173 |
tatct |
8392169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 141 - 451
Target Start/End: Complemental strand, 8397375 - 8397072
Alignment:
| Q |
141 |
aaaatttatgcaggggctacaaatcgtccccaagagcttgatgaagctgcacggaggagacttactaaacgactgtacattcccctaccatcctcaggtg |
240 |
Q |
| |
|
||||||||| |||| || ||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8397375 |
aaaatttatacaggcgcaacaaatcgtccgcaagatcttgatgaagcagcacgaaggagacttactaaacgactgtacattcccctaccatcgtcaggta |
8397276 |
T |
|
| Q |
241 |
ctaatcataattcttcatctttctataaacccttttaagcacaccatctaactaacacatttgcttggtattttagaggcaagagcttggatcgcacgta |
340 |
Q |
| |
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||||||| ||||| |||||||||| |||||||| ||||| |||||||| | ||| ||||| |||||||||||||||||||||| | ||||| |
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| T |
8397275 |
gtaatcatgattctccatctttctacaaacccttcatagcacg--atctaactta-----ttgtttggtcttttagaggcaagagcttggattgtacgta |
8397183 |
T |
|
| Q |
341 |
gccttttagagaaggatggattattcaagctatcaaatgaggaaattgatattatatgcaacttaaccgaaggtatagacattattcccgataattacag |
440 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||| || ||||||||||||||||| |||||||| |||| |||||| ||||||||| |
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|
| T |
8397182 |
accttttagagaaggatggcttattcaagatatcaaatgaggaaatggagattatatgcaacttaacagaaggtattgacactattcctattaattacag |
8397083 |
T |
|
| Q |
441 |
gatcttctgca |
451 |
Q |
| |
|
|||||||||| |
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|
| T |
8397082 |
tatcttctgca |
8397072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 141 - 439
Target Start/End: Original strand, 8409752 - 8410042
Alignment:
| Q |
141 |
aaaatttatgcaggggctacaaatcgtccccaagagcttgatgaagctgcacggaggagacttactaaacgactgtacattcccctaccatcctcaggtg |
240 |
Q |
| |
|
||||||||| |||| || ||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
8409752 |
aaaatttatacaggtgcaacaaatcgtccccaagatcttgatgaagtagcacaaaggagacttactaaacgactatacattcctctaccatcctcaggtg |
8409851 |
T |
|
| Q |
241 |
ctaatcataattcttca---tctttctataaacccttttaagcacaccatctaactaacacatttgcttggtattttagaggcaagagcttggatcgcac |
337 |
Q |
| |
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|||||||| ||||| || ||||||| ||| ||||||||||||||| |||||||||| ||||| ||| |||||||||||||| |||| |
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| T |
8409852 |
ctaatcatgattctccaaatcctttctacaaatccttttaagcacaccgtctaactaac-----------ttatttcagacgcaagagcttggattgcac |
8409940 |
T |
|
| Q |
338 |
gtagccttttagagaaggatggattattcaagctatcaaatgaggaaattgatattatatgcaacttaaccgaaggtatagacattattcccgataatta |
437 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| | ||||||| || ||||| ||||||||||| | |||||| |
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| T |
8409941 |
gtaatcttttagagaaggatggattattcaagctatcaaatgaggaaatggagattatacgtgacttaacggatggtattgacattattccagttaatta |
8410040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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