View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653-Insertion-18 (Length: 460)
Name: NF4653-Insertion-18
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-18 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 7 - 460
Target Start/End: Complemental strand, 25997085 - 25996632
Alignment:
| Q |
7 |
acttacatccatccgttcatgtattgtgtgacaggattatctaacggtgacattatgttcgtgaaagggacgttcactttatatagcaacgctctacata |
106 |
Q |
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| T |
25997085 |
acttacatccatccgttcatgtattgtgtgacaggattatctaacggtgacattatgttcgtgaaagggacgttcactttatatagcaacgctctacata |
25996986 |
T |
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| Q |
107 |
tataaactcaacatcatagcatgacaatacatttctcacgctttaacctgtaatttaaaacccaaaatataactccttaatagatgaaatacaacctcta |
206 |
Q |
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| T |
25996985 |
tataaactcaacatcatagcatgacaatacatttctcacgctttaacctataatttaaaacccaaaatataactccttaatagatgaaatacaacctcta |
25996886 |
T |
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| Q |
207 |
atctaataaatactaatccaataattaaggcagtgatgatgagattaatttcatttcttgaatgtcttagcagcatcaataaggatagccttcatcttac |
306 |
Q |
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| T |
25996885 |
atctaataaatactaatccaataattaaggcagtgatgatgagattaatttcatttcttgaatgtcttagcagcatcaataaggatagccttcatcttac |
25996786 |
T |
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| Q |
307 |
caacaacctcttgcatctgttccctagaatgtaacggtgctggatacacacaagcacaatccaagcttccatctcttatggtatcaaaaatggcaataga |
406 |
Q |
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| T |
25996785 |
caacaacctcttgcatctgttctctggagtgtaatggtgctggatacacacaagcacaatccaagcttccatctcttatggtatcaaaaatggcaataga |
25996686 |
T |
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| Q |
407 |
tggacccaccccatgaacagaagcacatcccatatagtcctctacaccaacctc |
460 |
Q |
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| T |
25996685 |
tggacccaccccatgaacagaagcacatcccatatagtcctctacaccaacctc |
25996632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 282 - 460
Target Start/End: Original strand, 42556913 - 42557091
Alignment:
| Q |
282 |
tcaataaggatagccttcatcttaccaacaacctcttgcatctgttccctagaatgtaacggtgctggatacacacaagcacaatccaagcttccatctc |
381 |
Q |
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|||||||| |||||||||||||| || || ||||||||| ||||| |||| || ||||| ||||||||||| || ||||||| | |||||||| | |
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| T |
42556913 |
tcaataagaatagccttcatcttgttaataagctcttgcatttgttctctagcgtgcaacggggctggatacacgcacacacaatctagccttccatccc |
42557012 |
T |
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| Q |
382 |
ttatggtatcaaaaatggcaatagatggacccaccccatgaacagaagcacatcccatatagtcctctacaccaacctc |
460 |
Q |
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| T |
42557013 |
ttatggtgtcaaaaatacccatagatggtcccaaaccatgaaccgaagcacaccccatgtagtcctctactccaacctc |
42557091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 8362041 - 8361981
Alignment:
| Q |
7 |
acttacatccatccgttcatgtattgtgtgacaggattatctaacggtgacattatgttcg |
67 |
Q |
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| T |
8362041 |
acttacattcatccatttatgtattgtatgacatgtttatctaacagtgacattatgttcg |
8361981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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