View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653-Insertion-2 (Length: 1062)
Name: NF4653-Insertion-2
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 499 - 1058
Target Start/End: Original strand, 39136071 - 39136633
Alignment:
| Q |
499 |
ttggcaataatgtctatgaagttatggcatttcc-attctcactataaagctgcaaagtgttctaattttctgagaagtttttcctgaatatttcta-tt |
596 |
Q |
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| T |
39136071 |
ttggcaatgatgtttgtgaagttatggcacgtcccattctcacgataaatctgcagaggtttctgattttatgagaagttttccatgaattcttctgctt |
39136170 |
T |
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| Q |
597 |
atgaacaaaatttcttgcgtttcctaagcaaaagttgtcattgtgctctcatgatcgtaggtgttttggtccatttcacaaaaatgctttgacaacaatt |
696 |
Q |
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| T |
39136171 |
atgaacaaaatttcttgcatttcctaagcaaaagttgtcattgtgctctcatgatcgtaggtgttttggtccatttcacaaaaatgctttgacaacaatt |
39136270 |
T |
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| Q |
697 |
agaatatgaaaaattagaataattacttacctaaattggcacaatttaatactacctactgtgattttagtcttcaaaattaattgttccaacacatttt |
796 |
Q |
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| T |
39136271 |
agaatatgaaaaattagaataattacttacctaaattggcacaatttaatactacctactgtgattttagtcttcaaaattaattgttccaacacatttt |
39136370 |
T |
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| Q |
797 |
tacctcatccgtacnnnnnnncctttttaaggtactaaaagtaaatacacattaattgannnnnnnnncaacctcttttcaataatctttctcggacttg |
896 |
Q |
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| T |
39136371 |
tacctcatccgtacaaaaaaacctttttaaggtactaaaagtaaatacacattaattga-ttttttttcaacctcttttcaataatctttctcggacttg |
39136469 |
T |
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| Q |
897 |
gttactaaataagtatggttcaattttgtc-nnnnnnnnnngtatggttcgagaagctttaagctgcgaacannnnnnnnnnnnaccatggactttaatc |
995 |
Q |
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| T |
39136470 |
gttactaaataagtatggttcaattttgtcaaaaaaaaaaagtatggttcaaagagctttaagctgcgaacatttttattttttaccatggactttaatc |
39136569 |
T |
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| Q |
996 |
ccaaatcatgagcaaagatttaatgagtaacattatgtaaagcataat-atggtatgaggtgct |
1058 |
Q |
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| T |
39136570 |
ccaaatcatgagcaaagatttaatgagtaacattatgtaaagcataataatggtatgaggtgct |
39136633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 405 - 678
Target Start/End: Original strand, 39134334 - 39134608
Alignment:
| Q |
405 |
ttgtatatttaactattttctaattaataaattctatcaattttttaatgagtagtagaaagttagtaaattttgtttatgaaatacaatcgagttggca |
504 |
Q |
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| T |
39134334 |
ttgtatatttaactattttccaattaataaattctatcaattttttaatgagtagtagaaagttagtaaattttgtttatgaaatacaatcgagttggca |
39134433 |
T |
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| Q |
505 |
ataatgtctatgaagttatggcatttccattctcactataaagctgcaaagtgttctaattttctgagaagtttttcctgaatatttctattatgaacaa |
604 |
Q |
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| T |
39134434 |
ataatgtctgtgaagttatggcatttccattcttactataaagctgcaaagtgttctaattttctgagaagtttttcctgaatatttctattatgaacaa |
39134533 |
T |
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| Q |
605 |
aatttcttgcgtttcctaagcaaaagttgtcattgtgctctc---atgatcgtaggtgttttggtccatttcacaaa |
678 |
Q |
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| T |
39134534 |
aatttc-tgcatttcctaagtaaaagttttcattgtactctcatgatgatcgtatgtg-tttggtccatttcacaaa |
39134608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 21 - 270
Target Start/End: Original strand, 39133988 - 39134231
Alignment:
| Q |
21 |
atgatggtgatttttcatgctagctgtttcaaaagtgtaaggttaattatatgttcaagtatgaataaaaatcgtatctggttattttaaatgtgtttat |
120 |
Q |
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| T |
39133988 |
atgatggtgatttttcatgctagctgtttcaaaagtgtaatgttaattatatgttcaagtatgaataaaaatcgtatctggttattttaaatatgtttat |
39134087 |
T |
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| Q |
121 |
ttcatcattttcactgtattttagaatgatgttattcttcttttcnnnnnnnnnnnnnngaatgatgttattctggtcctctnnnnnnnntgatgttatt |
220 |
Q |
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| T |
39134088 |
ttcatcattttcactgtattttagaatgatgttattcttcttt----caaaaaaaaaaagaatgatgttattctggtcctct-aaaaaaatgatgttatt |
39134182 |
T |
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| Q |
221 |
ctggtgattaatttcactgtgttattcttaaaattataataaaatgttgc |
270 |
Q |
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| T |
39134183 |
ctggtgattaatttcactgtgttattctt-aaattataataaaatgttgc |
39134231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 499 - 694
Target Start/End: Complemental strand, 39013668 - 39013472
Alignment:
| Q |
499 |
ttggcaataatgtctatgaagttatggcatttccattctcactataaagctgcaaagtgttctaattttctgagaagtttttcctgaatatttctattat |
598 |
Q |
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| T |
39013668 |
ttggcaataatatttgtgaagttatggaatttccattctcactataaagctgcaatggtttctgattttctgagaagttttccatgaattcttctattat |
39013569 |
T |
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| Q |
599 |
gaacaaaatttcttgcgtttcctaagcaaaagttgtcattgtgctctcatgatcgtaggtg--ttttggtccatttcacaaaaatgctttgacaacaa |
694 |
Q |
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| T |
39013568 |
gaataaaatctcttgcatttcctaatcaaaagtttccattgttctctcatgatcgtaggaggtgtttggtccatttcac-aaaatgctttgacaacaa |
39013472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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