View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653-Insertion-20 (Length: 436)
Name: NF4653-Insertion-20
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-20 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 15590565 - 15590312
Alignment:
| Q |
15 |
cctccaagttccgtctgtataacttagttttgaaacaattaacctttagactccaaacgagttcaaagcttcttaaatttgtttttattctccacaaatt |
114 |
Q |
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| T |
15590565 |
cctccaagttcagtctgtataaattagttttgaaacaattaacctttagactccaaacgagttcaacgcttcttaaatttgtttttattctccacaaatt |
15590466 |
T |
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| Q |
115 |
gtcgcacgaaagttctctcgagaattctatcatcggcatcttgtaaaatattgtaatgcaaattgtcatgtaccatataacctctccgcggttatcaaga |
214 |
Q |
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| T |
15590465 |
gtcgcacgagagttctctcgagaattctatcattggcatcttgtaaaatattgtaatgcaaattgtcatgtaccatataacctctccacggctatcaaga |
15590366 |
T |
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| Q |
215 |
atataca-cacgcttatggatctcctgatgtggtactagagaatatacacacgc |
267 |
Q |
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| T |
15590365 |
aaagaaaccgcgcttatggatctcctgacgtagtactagagaatacacacacgc |
15590312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 265 - 434
Target Start/End: Complemental strand, 15590355 - 15590186
Alignment:
| Q |
265 |
cgcttatggatctcctgatgtagtactagagaatatacacacgcattcaactaatacattttttcttcttcttagaaacctatcttttgaaacatgaaca |
364 |
Q |
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| T |
15590355 |
cgcttatggatctcctgacgtagtactagagaatacacacacgcattcaactaatacattttttcttcttctgagaaacctatctttcgaaacatgaaca |
15590256 |
T |
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| Q |
365 |
acaaataattccaattaattaagtcatgcaccttcactaagtccactttgaacatcaagcaattatactt |
434 |
Q |
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| T |
15590255 |
acaaataactccaatgaattaagtcatgcaccttcactaagtccactttgaacatcaagcaattatactt |
15590186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 15638536 - 15638398
Alignment:
| Q |
7 |
aaagcaatcctccaagttccgtctgtataacttagttttgaaacaattaacctttagactccaaacgagttcaaagcttcttaaatttgtttttattctc |
106 |
Q |
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|||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
15638536 |
aaaggaatcctccaagttcagtctctataacttatttttgaaacaattaacctttagactcgtaacgagttcaaagcttcttatatttgtttatattctc |
15638437 |
T |
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| Q |
107 |
cacaaattgtcgcacgaaagttctctcgagaattctatc |
145 |
Q |
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| T |
15638436 |
cacaaattgtcgcaagaaagttctctcgagaattctatc |
15638398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 15638397 - 15638309
Alignment:
| Q |
179 |
gtcatgtaccatataacctctccgcggttatcaagaatatacacacgcttatggatctcctgatgtggtactagagaatatacacacgc |
267 |
Q |
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| T |
15638397 |
gtcatgtaccatataacctctccgctgctatcaagaaaagaaccacgcttatggatctcctgacataatactagagaatatacatacgc |
15638309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 15638354 - 15638287
Alignment:
| Q |
263 |
cacgcttatggatctcctgatgtagtactagagaatatacacacgcattcaactaatacattttttct |
330 |
Q |
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| T |
15638354 |
cacgcttatggatctcctgacataatactagagaatatacatacgcattcaactaacaaattttttct |
15638287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 15634589 - 15634540
Alignment:
| Q |
116 |
tcgcacgaaagttctctcgagaattctatcatcggcatcttgtaaaatat |
165 |
Q |
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| T |
15634589 |
tcgcaagaaagttctctcgagaattctatcgttggcttgttgtaaaatat |
15634540 |
T |
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