View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4653-Insertion-21 (Length: 420)

Name: NF4653-Insertion-21
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4653-Insertion-21
NF4653-Insertion-21
[»] chr2 (6 HSPs)
chr2 (161-207)||(11654503-11654549)
chr2 (161-207)||(11668268-11668314)
chr2 (8-56)||(11654648-11654696)
chr2 (8-56)||(11668416-11668464)
chr2 (286-320)||(11654384-11654418)
chr2 (286-320)||(11668149-11668183)


Alignment Details
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 11654549 - 11654503
Alignment:
Q  161 gagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11654549 gagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 11654503  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 11668314 - 11668268
Alignment:
Q  161 gagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11668314 gagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 11668268  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 11654696 - 11654648
Alignment:
Q  8 gtgtcgaggatgaaggtggtgagctgtgtggtgtagaagggctttgagg 56  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11654696 gtgtagaggatgaaggtggtgagctgtgtggtgtagaagggctttgagg 11654648  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 11668464 - 11668416
Alignment:
Q  8 gtgtcgaggatgaaggtggtgagctgtgtggtgtagaagggctttgagg 56  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11668464 gtgtagaggatgaaggtggtgagctgtgtggtgtagaagggctttgagg 11668416  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 320
Target Start/End: Complemental strand, 11654418 - 11654384
Alignment:
Q  286 ttatgttggttatgtggtggagaagagctattagg 320  Q
    |||||||||||||||||||||||||||||||||||    
T  11654418 ttatgttggttatgtggtggagaagagctattagg 11654384  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 320
Target Start/End: Complemental strand, 11668183 - 11668149
Alignment:
Q  286 ttatgttggttatgtggtggagaagagctattagg 320  Q
    |||||||||||||||||||||||||||||||||||    
T  11668183 ttatgttggttatgtggtggagaagagctattagg 11668149  T

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