View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653-Insertion-3 (Length: 1042)
Name: NF4653-Insertion-3
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-3 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 693; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 266 - 1042
Target Start/End: Complemental strand, 46686467 - 46685688
Alignment:
| Q |
266 |
gtttaatccattcacaaatttgaataagcttgtgaagttatattatatattgatccttctgcatatttctatgac-atatgtgttagaattgcaattcaa |
364 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46686467 |
gtttaatccattcacaaatttgaataagctggtgaagttatattatatattgatccttctgcatatttctatgaccatatgtgttagaattgcaattcaa |
46686368 |
T |
|
| Q |
365 |
taatgtcgttggtatgtatttgcttcgtcaatattgtcatatagtcaatttttactttgaaagtacagtcaatcttttctttctaattgtgtcgatgtgt |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46686367 |
taatgtcgttggtatgtatttgcttcgtcaatattgtcatatagtcaatttttactttgaaagtacagtcaatcttttctttctaattgtgtcgatgtgt |
46686268 |
T |
|
| Q |
465 |
tgaacaaatcaatcattgtaaacatacttttgtttttgtatatagcttgcacgtattaggcgctgtgtagggaggagctgtcaagactatgcgtctgaga |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46686267 |
tgaacaaatcaatcattgtaaacatacttttgtttttgtatatagcttgcacgtattaggcgctgtgtagggaggagctgtcaagactatgcgtctgaga |
46686168 |
T |
|
| Q |
565 |
tgactagtttgcaaaggaacaacaacgcttctacttcaaacatcagttcttgtacaacaaaatctgacaagaggaatgctttcaatgaaaagcctgtgct |
664 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46686167 |
tgaccagtttgcaaaggaacaacaatgcttctacttcaaacatcagttcttgtacaacaaaatctgacaagaggaatgctttcaatgaaaagcccgtgct |
46686068 |
T |
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| Q |
665 |
tcctagaaaacacactagtgatccacaaaggtgtattttgcaaggaaatggttcttgcttaaatcattacaatggcaaagaaaacgataatatgtcttct |
764 |
Q |
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| T |
46686067 |
tcctagaaaacacactagtgatccacaaaggtgtattttgcaaggaaatggttcttgcttaaatcattacaacggcaaagaaaacgaaaatatgtcttct |
46685968 |
T |
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| Q |
765 |
gaaagaaaaactgaatcgcagagctcctcttctttgcatctctctgcaaggcaagggcattgcctatcactggtcccttcacaaatggaaagac-attgg |
863 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46685967 |
gaaagaaaaactgaatcgcagagctcctcttctttgcatctctctgcaaggcaagggcattgcctatcactggtcccttcacaaatggaaagacaattgg |
46685868 |
T |
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| Q |
864 |
ggccatcagagaatgaagttcaggctacaaaatatttcggtcggagtaccccgaaaaggacaatgaaagtggagttc-agaacataacgaatcaacagtt |
962 |
Q |
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| T |
46685867 |
ggccatcagagaatgaagttcaggctacaaaagatttcggtcggagtaccccaaaaaggacaatgaaagtggagttcaagaacataacgaatcaacagtt |
46685768 |
T |
|
| Q |
963 |
aaatcaaaacatgagaaggacaacgatagcgttggggaaattgtccgattgatccatgttcttctggttc-aatcatgaaa |
1042 |
Q |
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| T |
46685767 |
aaatcaaaacatgagaaggacaatgatagcgctggggaaa-cgtccgattgatccatcttcttctggttcaaatcatgaaa |
46685688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 46688019 - 46687758
Alignment:
| Q |
7 |
accaattgagggtgcaacaaatattcgggaagataatcaaactcaggacaatcttgcccatgttgctttaatggataacaatccatttcagagagcggat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
46688019 |
accaattgagggtgcaacaaatattcgggaagataatcaaacacaggacaatcttgcccatgttgctttaatggataacaatccatttaagagagcagat |
46687920 |
T |
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| Q |
107 |
gatgaggtcaggaaatcaaatctatttgagttacagtcaattttgtgcataacttatcatgcatgtttgtaaattatatatcagttatcatatacatatt |
206 |
Q |
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| T |
46687919 |
gatgaggtcagaaaatcaaatctatttgagttacagtcaattttgtgcataacttatcatgcatgtttgtaaattatatatcagttatc--atacatatt |
46687822 |
T |
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| Q |
207 |
atcttttgtactagttgtttctttatcttcttcatgtgttttttatgtccattaggattgttta |
270 |
Q |
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| T |
46687821 |
atcttttgtactagttgtgtctttatcttcttcatgtgttttttatgtccattatgattgttta |
46687758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 46704908 - 46704661
Alignment:
| Q |
41 |
aatcaaactcaggacaatcttgcccatgttgctttaatggataacaatccatttcagagagcggatgatgaggtcaggaaatcaaatctatttgagttac |
140 |
Q |
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|||||| | ||||||||||||||| |||||||||||||||||| |||| | || |||||| ||||| |||||||| |||||||||||| ||||||||| |
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| T |
46704908 |
aatcaagcacaggacaatcttgccaatgttgctttaatggatagaaatcaaattaagagaggggatggcgaggtcagaaaatcaaatctacttgagttac |
46704809 |
T |
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| Q |
141 |
agtcaattttgtgcataacttatcatgcatgtttgtaa---attatatatcagttatcatatacatattatcttttgtactagttgtttctttatcttct |
237 |
Q |
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||| ||||||||| ||| |||||||||||||||| | | ||||| |||||||||||| | |||| || ||||||| || |||| |||||||||| |
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| T |
46704808 |
agtaaattttgtgtatagcttatcatgcatgttttttatagattatttatcagttatcaca--catactaacttttgt-ctccttgtgtctttatcttta |
46704712 |
T |
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| Q |
238 |
tcatgtgttttttatgtccattaggattgtttaatccattcacaaatttga |
288 |
Q |
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| T |
46704711 |
tcctgtattttttatgtccattcggatcgtttaatccattcacaagtttga |
46704661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 475 - 587
Target Start/End: Complemental strand, 46704263 - 46704151
Alignment:
| Q |
475 |
aatcattgtaaacatacttttgtttttgtatatagcttgcacgtattaggcgctgtgtagggaggagctgtcaagactatgcgtctgagatgactagttt |
574 |
Q |
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||||||||| || |||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||| ||||| |||||||||||| ||| | |
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| T |
46704263 |
aatcattgtcaaaatacttttgtttttgtgtatagcttgcacgtattagacgctgtatacaaaggagctgtcaaggctatgagtctgagatgaccagtat |
46704164 |
T |
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| Q |
575 |
gcaaaggaacaac |
587 |
Q |
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| T |
46704163 |
gcaaaggaacaac |
46704151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 46681670 - 46681516
Alignment:
| Q |
43 |
tcaaactcaggacaatcttgcccatgttgctttaatggataacaatccatttcagagagcggatgatgaggtcaggaaatcaaatctatttgagttacag |
142 |
Q |
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|||||| |||| |||||| || |||||||||||| ||||| ||||| | || ||||| |||| ||||| | ||||||||||||||||||||||| |
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| T |
46681670 |
tcaaacacagggaaatctttccaatgttgctttaagggataccaatcgaagtcggagag---atgaagaggttggaaaatcaaatctatttgagttacaa |
46681574 |
T |
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| Q |
143 |
tcaattttgtgcataacttatcatgcatgtttgtaaattatatatcagttatcatata |
200 |
Q |
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| T |
46681573 |
tgaattttgtgtataacttctcatgcatgttcatagattatttatcagttttcatata |
46681516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 361
Target Start/End: Complemental strand, 46704630 - 46704569
Alignment:
| Q |
302 |
gttatattatatattgatccttct-gcatatttctatga-catatgtgttagaattgcaatt |
361 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||||| ||| | |||||||||||||||| |
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| T |
46704630 |
gttatattatatattgatccttctggcatatttatatgaccatgtctgttagaattgcaatt |
46704569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 644
Target Start/End: Complemental strand, 46695690 - 46695583
Alignment:
| Q |
537 |
aggagctgtcaagactatgcgtctgagatgactagtttgcaaaggaacaacaacgcttctacttcaaacatcagttcttgtacaacaaaatctgacaaga |
636 |
Q |
| |
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||||||||||||| ||||| |||||||| || | |||||||||||||||| | || |||||||||||| | ||| ||| || |||||||| | ||| |
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| T |
46695690 |
aggagctgtcaaggctatgagtctgagacaaccaatttgcaaaggaacaactctgtttatacttcaaacattaattcctgttcagcaaaatctaatgaga |
46695591 |
T |
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| Q |
637 |
ggaatgct |
644 |
Q |
| |
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|||||||| |
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| T |
46695590 |
ggaatgct |
46695583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 792 - 861
Target Start/End: Original strand, 21245144 - 21245213
Alignment:
| Q |
792 |
tcttctttgcatctctctgcaaggcaagggcattgcctatcactggtcccttcacaaatggaaagacatt |
861 |
Q |
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|||||||||||||| ||| |||||||||| |||| |||||| | |||||||| || ||| |||| ||||| |
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| T |
21245144 |
tcttctttgcatctttcttcaaggcaaggacattccctatcgcaggtccctttaccaatcgaaaaacatt |
21245213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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