View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653-Insertion-5 (Length: 826)
Name: NF4653-Insertion-5
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0044 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 747; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 747; E-Value: 0
Query Start/End: Original strand, 8 - 826
Target Start/End: Complemental strand, 35220013 - 35219195
Alignment:
| Q |
8 |
cttattagcttctgtccttttagcaaaagatggcaagcaaaatgaagctgaacgaacctgaaacataaaatggtgtcaaattatgcattaagaagataat |
107 |
Q |
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| T |
35220013 |
cttattagcttctgtccttttagcaaaagatggcaagcaaaatgaagctgaatgaacctgaaacataaaatggtgtcaaattatgcattaagaagataat |
35219914 |
T |
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| Q |
108 |
atatgctaaattagggcttgattacctctgagttgtaatacttcaaaggatgctttgatatgccataattttcaggaccaataggattaattggatttct |
207 |
Q |
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| T |
35219913 |
atatgctaaattagggcttgattacctctgagttgtaatacttcaaaggatgctttgatatgccataattttcaggaccaataggattaattggatttct |
35219814 |
T |
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| Q |
208 |
gaagtccacatatggaccttcagttgagcaaagcaagaaaccaatcactccactgaaaattaatcaaaacaaatactaattagttatttatacttatata |
307 |
Q |
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| T |
35219813 |
gaagtccacatatggaccttcagttgagcaaagcaagaaaccaatcactccactgaaaattaatcaaaacaaatactaattagttagttatacttatata |
35219714 |
T |
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| Q |
308 |
ttcctaatttgggatagttctatgaacatgttcacttgccttggatatgttgggacattagtccaagtatagtcactggagcctttgaaaattttgcggc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35219713 |
atcctaatttgggatagttctatgaacatgttcacttgccttggatatgttgggacattagtccaagcatagtcactggagcctttgaaaattttgcggc |
35219614 |
T |
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| Q |
408 |
ttttgattaatagttcttcaatatccaatgacttaaaccaaaagctctcagcttggaggcacaaaactcctccaggacgaagagcttttgaaatcaattc |
507 |
Q |
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| T |
35219613 |
ttttgattaatagttcttcaatatccaatgacttaaaccaaaagctttctccttgaatgcaaagaactcttccaagacaaagagctttttaaaccaattc |
35219514 |
T |
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| Q |
508 |
aaagaattgagtttcaaaaagctcatgatcaggccctgaatatcatatatagatgtaaataaattaccaactattataatgtaatgaaaatgtgtaaaaa |
607 |
Q |
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| T |
35219513 |
aaagaattgagtttcaaaaagctcatgatcaggccctgaatatcatatatagatgtaaataaattaccaactattataatgtaatgaaaatgtgtaaaaa |
35219414 |
T |
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| Q |
608 |
taattcttaagcaacaaatactagctaatagtactagaagagaaatcaaaggggtacttacttactggatcgaaggcatccactattattgcatcatatg |
707 |
Q |
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| T |
35219413 |
taattcttaagcaacaaatactagctaatagtactagaagagaaatgaaaggggtacttacttactggatcgaaggcatccactattattgcatcatatg |
35219314 |
T |
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| Q |
708 |
tgccttttgggacagaattcagaaaaattgttcctgcgccagtttcaaataattaaccatcacaataataaaaatgacataatgaataatatatctttgg |
807 |
Q |
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| T |
35219313 |
tgccttttgggacagaattcagaaaaattgttcctgcgccagtttcaaataattaaccatcacaataataaaaatgacataatgaataatatatctttgg |
35219214 |
T |
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| Q |
808 |
atacactatatataccatc |
826 |
Q |
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| T |
35219213 |
atgcactatatataccatc |
35219195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 80 - 534
Target Start/End: Original strand, 9058 - 9499
Alignment:
| Q |
80 |
gtgtcaaattatgcattaagaagataatatatgctaaattagggcttgattacctctgagttgtaatacttcaaaggatgctttgatatgccataatttt |
179 |
Q |
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| T |
9058 |
gtgtcaaattttgcattaagat-agagtatatgcttaattagtccttaattacctatgagttgaaaaactttaagggtaactttgatatgccataatttt |
9156 |
T |
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| Q |
180 |
caggaccaataggattaattggatttctgaagtccacatatggaccttcagttgagcaaagcaagaaaccaatcactccactgaaaattaatcaaaacaa |
279 |
Q |
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| T |
9157 |
atggaccaattgggttaattggatttctgaaatccacatatcgacgttcaatagaacaaagcaagaaatcaatcacctaactcaa--tcaatcaaaacaa |
9254 |
T |
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| Q |
280 |
atactaattagttatttatacttatatattc---ctaatttgggatagttctatgaacatgttcacttgccttggatatgttgggacattagtccaagta |
376 |
Q |
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| T |
9255 |
atactaattagttggttatacttacataataattctaatt-gggata-ttctaagcacatgttca-ttgact----------gggacattggcccttgaa |
9341 |
T |
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| Q |
377 |
tagtcactggagcctttgaaaattttgcggcttttgattaatagttcttcaatatccaatgacttaaaccaaaagctctcagcttggaggcacaaaactc |
476 |
Q |
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| T |
9342 |
tagtcattagagcctttgaatatttggcggcttttgattaggagttgttcaatatccaatgacttaaaccaaaagctttctccttgaatgcaaagaactc |
9441 |
T |
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| Q |
477 |
ctccaggacgaagagcttttgaaatcaattcaaagaattgagtttcaaaaagctcatg |
534 |
Q |
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| T |
9442 |
ttccaagacaaagagctttttaaaccaattcaaagaattgagtttctaaacgctcatg |
9499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 666 - 772
Target Start/End: Original strand, 10339 - 10445
Alignment:
| Q |
666 |
tacttactggatcgaaggcatccactattattgcatcatatgtgccttttgggacagaattcagaaaaattgttcctgcgccagtttcaaataattaacc |
765 |
Q |
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| T |
10339 |
tacttactaggtcgaaggcattcactattattgcatcatatgagccttttgggacataagttagaaaagttgttcctgtgccagtttcaattgattaagc |
10438 |
T |
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| Q |
766 |
atcacaa |
772 |
Q |
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| T |
10439 |
atcacaa |
10445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 401
Target Start/End: Complemental strand, 47475870 - 47475630
Alignment:
| Q |
160 |
ctttgatatgccataattttcaggaccaatagga-ttaattggatttctgaagtccacatatggaccttcagttgagcaaagcaagaaaccaatcactcc |
258 |
Q |
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||||||||| |||||||||| |||||| | || |||||||||||||| || |||||||||| || ||| | || |||| ||| ||| ||||||| | |
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| T |
47475870 |
ctttgatataccataattttatggaccatttggggttaattggatttctaaaatccacatatgaactttcgatggaacaaaacaaaaaatcaatcacctc |
47475771 |
T |
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| Q |
259 |
actgaaaattaatcaaaacaaatactaattagttatttatacttatatatt---cctaatttgggatagttctatgaacatgttcacttgccttggatat |
355 |
Q |
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| T |
47475770 |
actcat--tcaatcaaaacaaatactaattagttggttatacttatataataatcctaatt-gaaatatttaaa-gcacatgttca-ttaccttggacat |
47475676 |
T |
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| Q |
356 |
gttgggacattagtccaagtatagtcactggagcctttgaaaattt |
401 |
Q |
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|||| |||||||||||| | ||||||| ||||||||||||| |||| |
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| T |
47475675 |
gttgagacattagtccatgcatagtcattggagcctttgaatattt |
47475630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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