View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4653-Insertion-6 (Length: 826)

Name: NF4653-Insertion-6
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4653-Insertion-6
NF4653-Insertion-6
[»] chr1 (2 HSPs)
chr1 (61-826)||(1238040-1238832)
chr1 (8-63)||(1237922-1237977)


Alignment Details
Target: chr1 (Bit Score: 627; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 61 - 826
Target Start/End: Original strand, 1238040 - 1238832
Alignment:
Q  61 cttaacttggaaaatatttagtagtctataaatatcaagccttatacttttcaaaatttaaacagcatttctcattgcataatttaaatctgataacatc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1238040 cttaacttggaaaatatttagtagtctataaatatcaagccttatacttttcaaaatttaaacagcatttctcattgcataatttaaatctgataacatc 1238139  T
Q  161 catcacagtcaagtatacacttatagaaaaacggaaatgtaaatctattacaccttgtg-------ggaaccataaaaatgactctagtgcattgtgtaa 253  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  1238140 catcacagccaagtatacacttatagaaaaacggaaatgtaaatctattacaccttgtgcgaagtgggaaccataaaaatgactctagtgcattgtgtaa 1238239  T
Q  254 ggaagtattaaaattcagact------------gtggcacg----gtattcatcacctgggatttcagctggtcttaaccatttacgttggtcttaaacc 337  Q
    |||| ||||||||||||||||            ||||||||    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1238240 ggaaatattaaaattcagactaatcatatcatggtggcacgcacggtattgatcacctgggatttcagctggtcttaaccatttacgttggtcttaaacc 1238339  T
Q  338 tgtttcaagaacaaatttaaaaagaaaaaccatgttttcaaactaaatttacaatgtaaataattgatgataagcattagttgattcttgactaatttga 437  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1238340 tgtttcaagaacaagtttaaaaagaaaaactatgttttcaaactaaatttacaaagtaaataattgatgataagcattagttgattcttgactaatttga 1238439  T
Q  438 attttagtaagtgtgagttaaaaatagtggttactcaaaaagtcgtggtcaataaaaaatgtcactttcttcgttaagaaggaagaccatctatcaagaa 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1238440 attttagtaagtgtgagttaaaaatagtggttactcaaaaagtcgtggtcaataaaaaatgtcactttctttgttaagaaggaagaccatctatcaagaa 1238539  T
Q  538 agaagtatgacataaaaaatgtccgtctctttgtaaaataaacaagattaaacttctttttatttgttcacacttctctttataccaagtaaaaggtgaa 637  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1238540 agaagtatgacataaaaaatgtccgtctctttgtaaaataaacaagattaaacttctttttatttgttcacacttctctttataccaagtaaaaggtgaa 1238639  T
Q  638 tgggctcttccaacattcaacttttat-nnnnnnnnttagagtagtaataattctctaagaaacctttagtttactaaacttcatacaaatttcagacaa 736  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1238640 tgggctcttccaacattcaacttttataaaaaaaaattagagtagtaataattctctaagaaacctttagtttactaaacttcatacaaatttcagacaa 1238739  T
Q  737 agtataatatttacacacaaaaagggactctgccagccattgaca---tataatgatacacattccttggttcatatccaagaattttgtttc 826  Q
    |||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||    
T  1238740 agtataatatttacacacaaaaagggactctgtcagccattgacatactataatgatacacattccttggttcatatgcaagaattttgtttc 1238832  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 1237922 - 1237977
Alignment:
Q  8 cctctgagattgaatagtcctcttggtcactcatcggtctcaaaagtattgttctt 63  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  1237922 cctctgagattgaatagtcctcttggtcactcatctgtctcaaaactattgttctt 1237977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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