View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653-Insertion-7 (Length: 806)
Name: NF4653-Insertion-7
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-7 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 77 - 338
Target Start/End: Complemental strand, 51039279 - 51039019
Alignment:
| Q |
77 |
cttcttctagaaatgaaatttgtttgtttcagttccgttgaccgtccaagttgcaaaaccagttgtgcataactctcctccatcagttgacgaggttttc |
176 |
Q |
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| T |
51039279 |
cttcttctagaaatgaaatttgtttgtttcagttccgttgaccgtccaagttgcaaaaccagttgtacataactctcctccatcagttgacgaggttttc |
51039180 |
T |
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| Q |
177 |
aagtttcaacactcattttcgtttttcttcttcatttgcttgtttaatccattaacaattttatagcaggtgattttgaagtcttgtccaaagaaagtca |
276 |
Q |
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| T |
51039179 |
aagtttcaacactcattttcgattttcttcttcatttgcttgtttaat-cattaacaattttatagcaggtgattttgaagtcttgtccaaagaaagtca |
51039081 |
T |
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| Q |
277 |
ttgtgaacttcacagatttgctcaaggaggagaacctctatctaacaatagaggtaattata |
338 |
Q |
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| T |
51039080 |
ttgtgaacttcacagatttgctcaaggaggagaacctctatctaacaatagaggtaattata |
51039019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 581 - 806
Target Start/End: Complemental strand, 51037411 - 51037186
Alignment:
| Q |
581 |
atgattagtattgtatctaatatctagagaataattatatttattgattttgagcgaaggtgatcaaggatggctgcctgtattgattttgagcttgaag |
680 |
Q |
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| T |
51037411 |
atgattagtattgtatctaatatctagagaataattatatttattgattttgagcgaaggtgatcaaggatggctgcctgtattgattttgagcttgaag |
51037312 |
T |
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| Q |
681 |
gaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaattcgcataaagaatctctgcgtccattgcttgaggttattataccgc |
780 |
Q |
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| T |
51037311 |
gaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaattcgcataaagaatctctgcgtccattgcttgaggttattataccgc |
51037212 |
T |
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| Q |
781 |
attttcactgcttcactcattgctca |
806 |
Q |
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| T |
51037211 |
attttcactgcttcactcattgctca |
51037186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 636 - 770
Target Start/End: Complemental strand, 51045256 - 51045122
Alignment:
| Q |
636 |
gaaggtgatcaaggatggctgcctgtattgattttgagcttgaaggaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaatt |
735 |
Q |
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| T |
51045256 |
gaaggagatcaaggacggttgcctgtgttgattttgagcttgaaggaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaaca |
51045157 |
T |
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| Q |
736 |
cgcataaagaatctctgcgtccattgcttgaggtt |
770 |
Q |
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| T |
51045156 |
agtataaagaatatctgcgtccgttgcttgaggtt |
51045122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 457 - 526
Target Start/End: Complemental strand, 51037535 - 51037466
Alignment:
| Q |
457 |
aaaagtatatcgattaattgagagagaattgccattacatacaataaagcctatttttcaatcagaacaa |
526 |
Q |
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| T |
51037535 |
aaaagtatatcgattaattgagagataattgccattacatacaataaagcctatttttcaatcagaacaa |
51037466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 405 - 465
Target Start/End: Complemental strand, 51038952 - 51038892
Alignment:
| Q |
405 |
ggtctagtatttacaattcttgatggaactcatagatgagagaaaagcatagaaaagtata |
465 |
Q |
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| T |
51038952 |
ggtctagtatttacaattcttgatggaactcatagatgagagaaaagcatagaaaaatata |
51038892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 51045481 - 51045417
Alignment:
| Q |
97 |
tgtttgtttcagttccgttgaccgtccaagttgcaaaaccagttgtgcataactctcctccatca |
161 |
Q |
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| T |
51045481 |
tgtttgtttcagttcctttaaccgtccaagtcgcaaaaccagtggtgcataactctcctccatca |
51045417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 337
Target Start/End: Complemental strand, 51045405 - 51045316
Alignment:
| Q |
248 |
gattttgaagtcttgtccaaagaaagtcattgtgaacttcacagatttgctcaaggaggagaacctctatctaacaatagaggtaattat |
337 |
Q |
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| T |
51045405 |
gattatgaaatcatgtccaaagaaagatattccgaacttcaatgatttgctaaagcaggagaatctctacttaacaatagaggtagttat |
51045316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 415 - 474
Target Start/End: Complemental strand, 36711 - 36652
Alignment:
| Q |
415 |
ttacaattcttgatggaactcatagatgagagaaaagcatagaaaagtatatcgattaat |
474 |
Q |
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| T |
36711 |
ttacaattcttgatagaactcatacatgagagaaaagtatagaaaaatataatgattaat |
36652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 462
Target Start/End: Complemental strand, 43182348 - 43182301
Alignment:
| Q |
415 |
ttacaattcttgatggaactcatagatgagagaaaagcatagaaaagt |
462 |
Q |
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| T |
43182348 |
ttacaattcttgatagaactcataattgagagaaaagtatagaaaagt |
43182301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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