View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653-Insertion-8 (Length: 731)
Name: NF4653-Insertion-8
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 177 - 522
Target Start/End: Original strand, 12273714 - 12274059
Alignment:
| Q |
177 |
ctttctttaccttgtatgttttatagcaaaaatggatggaattgtttccaacaattgttgctagagcaagaactgttcaaattatagcttcaggtgcttc |
276 |
Q |
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| T |
12273714 |
ctttctttaccttgtatgttttatagcaaaaatggatggaattgtttccaacaattgttgctagagcaagaactgttcaaattatagcttcaggtgcttc |
12273813 |
T |
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| Q |
277 |
tggccatgcaagtgggactcttcagctggtaggtgtcaaatgattgcttgaatttttatgatatgcttcaagatattgttgtattgataagcttgatttt |
376 |
Q |
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| T |
12273814 |
tggccatgcaagtgggactcttcagctggtaggtgtcaaatgattgcttgaatttttatgatatgcttcaagatattgttgtattgataagcttgatttt |
12273913 |
T |
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| Q |
377 |
tatgatattaacaagtttcacttgttagttgctatgtataacaatgataattcggcttaataaagagaggtcatgaacatccaacatgtgtcggtatcag |
476 |
Q |
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| T |
12273914 |
tatgatattaacaagtttcacttgttagttgctatgtataacaatgataattcggcttaataaagagaggtcatgaacatccaacatgtgtcggtatcag |
12274013 |
T |
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| Q |
477 |
acaccaacataacttcgacacacgcaacacaactagatatatattg |
522 |
Q |
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| T |
12274014 |
acaccaacataactttgacacacgcgacacaactagatatatattg |
12274059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 620 - 731
Target Start/End: Original strand, 12274155 - 12274266
Alignment:
| Q |
620 |
ctaaagttgctatttgaatattgaatgaacactaacatattgcatatttttgcgaacagatgcacgcagaattccaagttctttctccgttggtgtccac |
719 |
Q |
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| T |
12274155 |
ctaaaattgctatttgaatattgaatgaacactaacatattgcatatttttgcgaacagatgcacgcagaattccaagttctttctccgttggtgtccac |
12274254 |
T |
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| Q |
720 |
cagagagactca |
731 |
Q |
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| T |
12274255 |
cagagagactca |
12274266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 12273545 - 12273635
Alignment:
| Q |
7 |
aggaatgagttaaggaatgaagctacgcgtgattctgctgttgtaatcatgaatagtgtcactcttgttgatgcttttcttgatgctgtaa |
97 |
Q |
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| T |
12273545 |
aggaatgagttaaggaatgaagctacgcgtgattctgctgttgtaatcatgaatagtgttactcttgttgatgcttttcttgatgctgtaa |
12273635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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