View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653-Insertion-9 (Length: 728)
Name: NF4653-Insertion-9
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653-Insertion-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 7 - 728
Target Start/End: Original strand, 49768115 - 49768833
Alignment:
| Q |
7 |
aatacgtacatggaaggtggtgaactgagagtggcgagtggacgcgtagggagctccagcatatggagaagtggtgcagttgatgtattttcaggatcgt |
106 |
Q |
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| T |
49768115 |
aatacatacatggaaggtggtgaactgagagtggcgagtggacgcgtagggagctccagcatatggagaagtggtgcagttgatgtattttcaggatcgt |
49768214 |
T |
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| Q |
107 |
caagacgggatgatgatgaacaagagcttcaatgggctgctattgagaagcttccgacctatctacgcatgactagaggtatactgaatgaatcacaaag |
206 |
Q |
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| T |
49768215 |
caagaagggatgatgatgaacaagagcttcaatgggctgctattgagaagcttccgacctatctacgcatgactagaggtatactgaatgaatcacaaag |
49768314 |
T |
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| Q |
207 |
tgaacagcctatagagattgatatcaacaaacttggaccactgcagagaaagaatttagtggagagacttgtcaagattgccgaggaggataatgagaag |
306 |
Q |
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| T |
49768315 |
tgaacagcctatagagattgatatcaacaaacttggaccactgcagaggaagaatttagtggagagacttgtcaagattgccgaggaagataatgagaag |
49768414 |
T |
|
| Q |
307 |
ttcttgttgaagttaagacaacgcattgatcggtatgtatgccaccaacctatctagcaccgacatttcaaattgaatgcatgtttattgcgtagattaa |
406 |
Q |
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| T |
49768415 |
ttcttgttgaagttaagacaacgcattgatcggtatgtatgctaccaacttatctagcaccgacatttcaaattgaatgcatgtttattgcgttgattaa |
49768514 |
T |
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| Q |
407 |
gataggacattttcttaaattataaacaaattccgtgtctgtgtaaatgtttc-aacgcagtactaacttgagttgttgttttgtgtctgtgtttgttct |
505 |
Q |
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| T |
49768515 |
gataggacattttcttaaattataaacaaattccgtgtctgtgtaaatgtttctaacgcagtactaacttgagttgttgttttgtgtctgtgtttgttct |
49768614 |
T |
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| Q |
506 |
agttttgaaatgaatcttaaagaaattatgtaaggttttaagtagtggttgcatcgtaattcttgatatttgacagttgaattactgtcaaatgcagttg |
605 |
Q |
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| T |
49768615 |
agttttgaaatgaatcttaaagaaattatgtaaggttttaagtagtggttgcatcgtaattcttgatatttg--tgttgaattactgtcaaatgcagttg |
49768712 |
T |
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| Q |
606 |
atacaatcttggttgtggttgcagagatatnnnnnnntcgacgatgttttggccaaatagtgataatgtaccattttttgaaactctggcatcatgtgta |
705 |
Q |
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| T |
49768713 |
atacaatattggttgtggttgc-gagatat-aaaaaatcgacgatgttttggccaaatagtgataatgtaccattttttgaaactctggcatcatgtgta |
49768810 |
T |
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| Q |
706 |
gaggaatttacaagtttgtgtaa |
728 |
Q |
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| T |
49768811 |
gaggaatttacaagtttgtgtaa |
49768833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 465 - 628
Target Start/End: Complemental strand, 3829667 - 3829504
Alignment:
| Q |
465 |
agtactaacttgagttgttgttttgtgtctgt--gtttgttctagttttgaaatgaatcttaaagaaattatgtaaggttttaagtagtggttgcatcgt |
562 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||| ||||| |||||||||||||||||||| ||||||| |||| |
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| T |
3829667 |
agtactaacttgagttgttgttttgtgtctgtacgagtgttctaattttgagatgaatcataaaggaattatgtaaggttttaagtgttggttgcgtcgt |
3829568 |
T |
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| Q |
563 |
aattcttgatatttgacagttgaattactgtcaaatgcagttgatacaatcttggttgtggttgca |
628 |
Q |
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| T |
3829567 |
aattcttgatatttg--agtagaattacgggcaaatgcagttgatagtatcttggtcgtggttgca |
3829504 |
T |
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