View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4653_high_18 (Length: 250)

Name: NF4653_high_18
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4653_high_18
NF4653_high_18
[»] chr6 (3 HSPs)
chr6 (106-239)||(34264899-34265031)
chr6 (95-239)||(25970742-25970885)
chr6 (95-239)||(25975182-25975325)
[»] chr5 (4 HSPs)
chr5 (104-235)||(38936052-38936182)
chr5 (99-235)||(38095244-38095374)
chr5 (126-228)||(16678519-16678621)
chr5 (127-228)||(37609911-37610010)
[»] chr8 (2 HSPs)
chr8 (122-239)||(18272835-18272951)
chr8 (126-235)||(37589747-37589856)
[»] chr3 (2 HSPs)
chr3 (104-235)||(53520798-53520928)
chr3 (124-239)||(18256477-18256588)
[»] chr1 (4 HSPs)
chr1 (126-235)||(23085948-23086057)
chr1 (105-235)||(21057050-21057179)
chr1 (127-239)||(37891285-37891395)
chr1 (126-235)||(8257002-8257112)
[»] chr7 (1 HSPs)
chr7 (95-235)||(35103197-35103336)
[»] chr4 (4 HSPs)
chr4 (99-239)||(26602138-26602277)
chr4 (132-235)||(36895415-36895517)
chr4 (107-235)||(8121293-8121420)
chr4 (169-228)||(37062643-37062702)
[»] chr2 (2 HSPs)
chr2 (95-235)||(19529238-19529377)
chr2 (169-228)||(23455494-23455553)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 34264899 - 34265031
Alignment:
Q  106 ggtcatacaaatgaataaattatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccagaa 205  Q
    ||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34264899 ggtcatacaaaagaacaa-ttatagcgctaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccagaa 34264997  T
Q  206 acgtctttaatgtaccatattaaccaattttcat 239  Q
    ||||||||||||||||||||||| ||||||||||    
T  34264998 acgtctttaatgtaccatattaaacaattttcat 34265031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 25970742 - 25970885
Alignment:
Q  95 gctaacgcccgggtcatacaaatgaataaattatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaata 194  Q
    |||||||| | ||||||||||   || ||||||||||||||||||||||||||| ||||| |||||||||  ||||||||| |||||||||| ||||| |    
T  25970742 gctaacgcacaggtcatacaacaaaaaaaattatagcgcaaatatgaaagtaaatatttttcttgaatcgttaaaatagtaaaattcaattcgtaaaaaa 25970841  T
Q  195 aattgccagaaacgtctttaatgtaccatattaaccaattttcat 239  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  25970842 aattgccagaaacgtctttaa-gtaccatattaaacaattttcat 25970885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 25975182 - 25975325
Alignment:
Q  95 gctaacgcccgggtcatacaaatgaataaattatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaata 194  Q
    |||||||| | ||||||||||   || ||||||||||||||||||||||||||| ||||| |||||||||  ||||||||| |||||||||| ||||| |    
T  25975182 gctaacgcacaggtcatacaacaaaaaaaattatagcgcaaatatgaaagtaaatatttttcttgaatcgttaaaatagtaaaattcaattcgtaaaaaa 25975281  T
Q  195 aattgccagaaacgtctttaatgtaccatattaaccaattttcat 239  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  25975282 aattgccagaaacgtctttaa-gtaccatattaaacaattttcat 25975325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 38936052 - 38936182
Alignment:
Q  104 cgggtcatacaaatgaataaattatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccag 203  Q
    ||||||||||||| ||| |||| |||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||     
T  38936052 cgggtcatacaaaagaacaaat-atagcgtaaatatgaaagtaaatattttacttgaatcgaaataatagtataattcaattcataagataaattgccac 38936150  T
Q  204 aaacgtctttaatgtaccatattaaccaattt 235  Q
    |||||| |||| ||||||||||||| ||||||    
T  38936151 aaacgtttttactgtaccatattaaacaattt 38936182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 99 - 235
Target Start/End: Original strand, 38095244 - 38095374
Alignment:
Q  99 acgcccgggtcatacaaatgaataaattatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaatt 198  Q
    |||| ||||||||||| | ||| |||| ||||||||||||||||||||||     |||||||||||||| |||||||||||||||||||||| |||||||    
T  38095244 acgcacgggtcatacataagaacaaat-atagcgcaaatatgaaagtaaa-----tacttgaatcgaaataatagtataattcaattcataagataaatt 38095337  T
Q  199 gccagaaacgtctttaatgtaccatattaaccaattt 235  Q
    |||| |||||| |||| ||||||||||||| ||||||    
T  38095338 gccacaaacgtttttactgtaccatattaaacaattt 38095374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 16678519 - 16678621
Alignment:
Q  126 tatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccagaaacgtctttaatgtaccatat 225  Q
    |||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||  || |||||| |||| ||| | ||||    
T  16678519 tatagcgcaaatataaaagtaaatattttacttgaatcgaaataatagtataatttaattcataagataaattttcacaaacgtttttactgtgctatat 16678618  T
Q  226 taa 228  Q
    |||    
T  16678619 taa 16678621  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 37610010 - 37609911
Alignment:
Q  127 atagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccagaaacgtctttaatgtaccatatt 226  Q
    ||||||||||||| | | |||| | | |||||||||||||||||||||||||||||| ||  ||||||||||| || |||||| |||||||||| |||||    
T  37610010 atagcgcaaatataagaataaatactctacttgaatcgaaaaaatagtataattcaactc--aaaataaattgacataaacgtttttaatgtactatatt 37609913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 18272835 - 18272951
Alignment:
Q  122 aaattatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccagaaacgtctttaatgtacc 221  Q
    |||||| |||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||| ||||| |||||||||||||||||||||| |||||    
T  18272835 aaattacagcgcaaatatgaaagtaaatatttttcttgaatcgtaaaaatagtaaaattcaattcgtaaaaaaaattgccagaaacgtctttaa-gtacc 18272933  T
Q  222 atattaaccaattttcat 239  Q
    ||||||| ||||||||||    
T  18272934 atattaaacaattttcat 18272951  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 37589856 - 37589747
Alignment:
Q  126 tatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccagaaacgtctttaatgtaccatat 225  Q
    ||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |||| ||||| ||||    
T  37589856 tatagcgcaaatatgaaagtaaatactttacttgaatcgaaataatagtataattcaattcataaaataaattgccacatacgtttttactgtacgatat 37589757  T
Q  226 taaccaattt 235  Q
    ||| ||||||    
T  37589756 taaacaattt 37589747  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 53520798 - 53520928
Alignment:
Q  104 cgggtcatacaaatgaataaattatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccag 203  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||| |  ||||||||||||||| |||||||||||||||||||||| |||||||||||     
T  53520798 cgggtcatacaaaagaacaaat-atagcgcaaatatgaaagtaaatacattacttgaatcgaaataatagtataattcaattcataagataaattgccac 53520896  T
Q  204 aaacgtctttaatgtaccatattaaccaattt 235  Q
    |||| | |||| ||||||||||||| ||||||    
T  53520897 aaacatttttactgtaccatattaaacaattt 53520928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 18256588 - 18256477
Alignment:
Q  124 attatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccagaaacgtctttaatgtaccat 223  Q
    ||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||| |||||   ||| |||||||||||||||||||||| |||||||    
T  18256588 attatagcgcaaatatgaaagtaaatatttttcttgaatcgtaaaaatagtaaaatttaattc---aaaaaaattgccagaaacgtctttaa-gtaccat 18256493  T
Q  224 attaaccaattttcat 239  Q
    ||||| ||||||||||    
T  18256492 attaaacaattttcat 18256477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 23085948 - 23086057
Alignment:
Q  126 tatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccagaaacgtctttaatgtaccatat 225  Q
    ||||| ||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||    
T  23085948 tatagtgcaaatatgaaagtaaatacttaccttgaatcgaaaaaatagtataattcaattcataaaataaattgccacaaacgtttttaatgtaccacat 23086047  T
Q  226 taaccaattt 235  Q
    ||| ||||||    
T  23086048 taaacaattt 23086057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 21057179 - 21057050
Alignment:
Q  105 gggtcatacaaatgaataaattatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccaga 204  Q
    |||||||||||| ||| |||| |||||| |||||| |||||||| | |||||||||||||||| |||||||||||| ||||||||| ||||||||||| |    
T  21057179 gggtcatacaaaagaacaaat-atagcgtaaatataaaagtaaatactttacttgaatcgaaataatagtataatttaattcataagataaattgccaca 21057081  T
Q  205 aacgtctttaatgtaccatattaaccaattt 235  Q
    ||||| |||| ||||||||||||| ||||||    
T  21057080 aacgtttttactgtaccatattaaacaattt 21057050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 37891285 - 37891395
Alignment:
Q  127 atagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccagaaacgtctttaatgtaccatatt 226  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||| |||| ||||| ||||| |||||||||||||||||||||| ||||||||||    
T  37891285 atagcgcaaatatgaaagtaaatatttttcttgaatcgtaaaaatagtaaaatttaattcgtaaaa-aaattgccagaaacgtctttaa-gtaccatatt 37891382  T
Q  227 aaccaattttcat 239  Q
    || ||||||||||    
T  37891383 aaacaattttcat 37891395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 8257112 - 8257002
Alignment:
Q  126 tatagcgcaaatatgaaagtaaaca-ttttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccagaaacgtctttaatgtaccata 224  Q
    |||||| |||||||||||||||| | |||||||| |||  ||| ||  |||||||||||||||||| ||||||||||| |||| | |||| |||||||||    
T  8257112 tatagcacaaatatgaaagtaaatacttttacttaaattaaaataactgtataattcaattcataagataaattgccacaaacatttttactgtaccata 8257013  T
Q  225 ttaaccaattt 235  Q
    |||| ||||||    
T  8257012 ttaaacaattt 8257002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 235
Target Start/End: Complemental strand, 35103336 - 35103197
Alignment:
Q  95 gctaacgcccgggtcatacaaatgaataaattatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaata 194  Q
    |||||||| || |||||||||| ||| |||| |||| ||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||    
T  35103336 gctaacgcacgcgtcatacaaaagaacaaat-atagtgcaaatatgaaagtaaatactttacttgaatcgaaataatagtataattcaattcataaaata 35103238  T
Q  195 aattgccagaaacgtctttaatgtaccatattaaccaattt 235  Q
    ||| | || | |||| |||| ||||||||||||| ||||||    
T  35103237 aatcggcacagacgtttttattgtaccatattaaacaattt 35103197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 239
Target Start/End: Original strand, 26602138 - 26602277
Alignment:
Q  99 acgcccgggtcatacaaatgaataaattatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaatt 198  Q
    |||| |||||| |||||| ||| |||| |||||| ||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||| |||||||    
T  26602138 acgcacgggtcgtacaaaagaacaaat-atagcgtaaatatgaaagtaaatactttacttgaatcaaaataatagtataattcaattcataagataaatt 26602236  T
Q  199 gccagaaacgtctttaatgtaccatattaaccaattttcat 239  Q
    |||| |||||| |||| |||||||| |||| ||||||||||    
T  26602237 gccacaaacgtttttactgtaccatgttaaacaattttcat 26602277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 36895415 - 36895517
Alignment:
Q  132 gcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaataaattgccagaaacgtctttaatgtaccatattaacca 231  Q
    |||||||||||| |||| | ||  ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||| ||    
T  36895415 gcaaatatgaaaataaatacttaccttgaatcgaaaaaatagtataattcaattcat-aaataaattgccacaaacgtttttaatgtaccacattaaaca 36895513  T
Q  232 attt 235  Q
    ||||    
T  36895514 attt 36895517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 8121420 - 8121293
Alignment:
Q  107 gtcatacaaatgaataaattatagcgcaaatatgaaagtaaacattttactt-gaatcgaaaaaatagtataattcaattcataaaataaattgccagaa 205  Q
    |||||||||| ||| |||| |||| | ||||||||||||||| | ||||||| ||||||||| ||||||||| || ||||||||| ||||||||||| ||    
T  8121420 gtcatacaaaagaacaaat-atagtgaaaatatgaaagtaaatactttactttgaatcgaaataatagtatattt-aattcataagataaattgccacaa 8121323  T
Q  206 acgtctttaatgtaccatattaaccaattt 235  Q
    |||| |||| | ||||||||||| ||||||    
T  8121322 acgtttttactttaccatattaaacaattt 8121293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 37062702 - 37062643
Alignment:
Q  169 aatagtataattcaattcataaaataaattgccagaaacgtctttaatgtaccatattaa 228  Q
    |||||||||||||||||||||| || |||||||| |||||| | ||  ||||||||||||    
T  37062702 aatagtataattcaattcataatattaattgccacaaacgtttctaccgtaccatattaa 37062643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 235
Target Start/End: Complemental strand, 19529377 - 19529238
Alignment:
Q  95 gctaacgcccgggtcatacaaatgaataaattatagcgcaaatatgaaagtaaacattttacttgaatcgaaaaaatagtataattcaattcataaaata 194  Q
    |||||||| ||||||||||||| ||| |||| |||||||||||||||||||||| | ||||||| ||| |||| ||||||||||||||||||||||||||    
T  19529377 gctaacgcacgggtcatacaaaagaacaaat-atagcgcaaatatgaaagtaaatactttacttaaattgaaataatagtataattcaattcataaaata 19529279  T
Q  195 aattgccagaaacgtctttaatgtaccatattaaccaattt 235  Q
    |||| | | |||||| |||| | ||||||||||| ||||||    
T  19529278 aatttctacaaacgtttttactataccatattaaacaattt 19529238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 23455494 - 23455553
Alignment:
Q  169 aatagtataattcaattcataaaataaattgccagaaacgtctttaatgtaccatattaa 228  Q
    |||||||||||||||||||||| || |||||||| |||||| | || | |||||||||||    
T  23455494 aatagtataattcaattcataatattaattgccataaacgtttgtactataccatattaa 23455553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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