View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_high_27 (Length: 231)
Name: NF4653_high_27
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 38998519 - 38998319
Alignment:
| Q |
14 |
ttatactatgttgttcatcacagtgagtaaccaatcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaa |
113 |
Q |
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| T |
38998519 |
ttatactatgttgttcatcacagtgagtaaccaatcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaa |
38998420 |
T |
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| Q |
114 |
tcccctgcagcaatcgcggattcccccttttcactgccactttcctgccatcccttaagtctcgcttgtatactttcccaaaaccacctaccccaactat |
213 |
Q |
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| T |
38998419 |
tcccctgcagcaatcgcggattcccccttttcactgccactttcctgccatcccttaagtctcgcttgtatactttcccaaaaccacctaccccaactat |
38998320 |
T |
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| Q |
214 |
a |
214 |
Q |
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| T |
38998319 |
a |
38998319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 41048929 - 41049097
Alignment:
| Q |
41 |
taaccaatcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattccccc |
140 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| | | ||||||||||||| |
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| T |
41048929 |
taaccaatcaaggacaccaaatgacgatgacggaactgagacaacatttcaatttcagttctaaattcagcaatcccttgctgggaccgcggattccccc |
41049028 |
T |
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| Q |
141 |
ttttcactgccactttcctgccatcccttaagtctcgcttgtatactttcccaaaaccacctaccccaa |
209 |
Q |
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| T |
41049029 |
tcttcactgccacttttctaccatcccttaactctcccttgtatactttcccaaaaccaccaaccccaa |
41049097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 41041463 - 41041537
Alignment:
| Q |
48 |
tcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgca |
122 |
Q |
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| T |
41041463 |
tcaaagacacctgatgccgatggtggaactgagacaacatttcaatttcaactcgaaattcagcaatcccctgca |
41041537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 22901739 - 22901772
Alignment:
| Q |
65 |
cgatgacggaactgagacaacatttcaatttcag |
98 |
Q |
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| T |
22901739 |
cgatgacggaactgagacaacatttcaatttcag |
22901772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 22953407 - 22953440
Alignment:
| Q |
65 |
cgatgacggaactgagacaacatttcaatttcag |
98 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
22953407 |
cgatgacggaactgagacaacatttcaatttcag |
22953440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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