View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4653_high_9 (Length: 331)
Name: NF4653_high_9
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 316
Target Start/End: Original strand, 25574341 - 25574625
Alignment:
| Q |
30 |
tttcttactatttttattcatgcattttaacctgtcttctatcaaaattactcttccnnnnnnngtcattataaaataaaacgaaaatatgttattaagt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25574341 |
tttcttactatttttattcatgcattttaacctgt--tcgatcaaaattactcttccattttttgtcattatgaaataaaacgaaaatatgttattaagt |
25574438 |
T |
|
| Q |
130 |
tcgtctatgcatacatttttatattgtaaatgaaattactttcatgtttgtggtagtactgacacctctgatcaaagacgtgtctgagtctgacattgac |
229 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25574439 |
tcgtctatgcatacatttttatattttacatgaaattactttcatgtttgtggtagtactaacacctctgatcaaagacgtgtctgagtctgacattgac |
25574538 |
T |
|
| Q |
230 |
atgacaccaatacatacatgtgattacgttcaaataatttatttannnnnnnaaattattattcatgtcgatttgtgagctgtgtct |
316 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25574539 |
atgacaccgatacatacatgtgattacgttcaaataatttatttatttttttaaattattattcatgtcgatttgtgagctgtgtct |
25574625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 273
Target Start/End: Complemental strand, 9895196 - 9895168
Alignment:
| Q |
245 |
acatgtgattacgttcaaataatttattt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9895196 |
acatgtgattacgttcaaataatttattt |
9895168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University