View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_1 (Length: 612)
Name: NF4653_low_1
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 20 - 604
Target Start/End: Complemental strand, 34572625 - 34572041
Alignment:
| Q |
20 |
gtcttcacatttcatctcatcaatcttttcataaaaatcgtaaaatgggtgaaggcaaacatttgttgaaggctatcgctaatcgcatagaaaggatttt |
119 |
Q |
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| T |
34572625 |
gtcttcacatttcatctcatcaatcttttcataaaaatcgtaaaatgggtgaaggcaaacatttgttgaaggctatcgctgatcgcttagaaaggatttt |
34572526 |
T |
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| Q |
120 |
acataagaaagaacgaaactcaaaacccgtggattgttcagaaacatcaaattcattgtctgattacgaagatagtgttcaagaaaattcacccccttgt |
219 |
Q |
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| T |
34572525 |
acataagaaagaacgaaactcaaaacccgtggattgttcagaaacatcaaattcattgtctgattacgaagatagtgttcaagaaaattcacccccttgt |
34572426 |
T |
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| Q |
220 |
agttttgaagaaggcattgcactaatgctgtcaagagataaccaaccagaaagtcctgaaaatttacagggtggtattttagtagataagatttatgaag |
319 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34572425 |
agttttgaagaaggcattgcactaatgcagtcaagagataaccaaccagaaagtcctgaaaatttgcagggtggtattttagtagataagatttatgaag |
34572326 |
T |
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| Q |
320 |
tatctccatacaatcttaatgtagttcttttcgcgccggattcacagtttaggaaagatttagcagaacatcaagggacaacaaatttgcaagaaggggc |
419 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34572325 |
tatctccatacaatcttaatgtagttcttttcgtgccggattcacagtttaggaaagatttagcagaacaacaagggacaacaaatttgcaagaaggggc |
34572226 |
T |
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| Q |
420 |
ttggtcctggaaagatgaagatatgtcttgtttgactcgagtcgtcaactatacaaaagctgcttcaaaattggttaaagctctcaataccaccgaggaa |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34572225 |
ttggtcctggaaagatgaagatatgtcttgtttgactcgagtcgtcaactatacaaaagctgcttcaaaattggttaaagctctcaataccactgaggaa |
34572126 |
T |
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| Q |
520 |
caaacctatattagagcgactaaagatgaatttgatgtacttgttagtgtatgcacccctgaggttccttatgggaattcatttc |
604 |
Q |
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| T |
34572125 |
caaacctatattagagcgactaaagatgaatttgatgtacttgttagtgtatgcacccctgaggttccttatgggaattcatttc |
34572041 |
T |
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