View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_10 (Length: 329)
Name: NF4653_low_10
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 33992998 - 33992699
Alignment:
| Q |
11 |
gtagcataggtgataagatatgaattcataatgattattaattaaagcaagattttcatacgctgccctggatcgcaattgtatttgtgacatcaaggtt |
110 |
Q |
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| T |
33992998 |
gtagcataggtgataagatatgaatacataatgattattaattaaagcaagattttcatacgctgccctggatcgcaattgtatttgtgacatcaaggtt |
33992899 |
T |
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| Q |
111 |
tttgatgtctataatacaattgcgattgaggtagtatcgatgatatttgatcacgattctttgcaatatcaaaattgcgactgcgatttaaacgattgag |
210 |
Q |
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| T |
33992898 |
tttgatgtctataatacaattgcgattgaggtagcatcgatgatatttgatcacgattctttgcaatatcaaaattgtgactgcgatttaaacgattgag |
33992799 |
T |
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| Q |
211 |
gaacaattgacttaccagaataccatttgcaaacctgactaggacagtcataacaagggcataagcagctaattcggttgaaccaatatgaccaatgaag |
310 |
Q |
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| T |
33992798 |
gaacaattgacttaccagaataccatttgcaaacctgactaggacagtcataacaagggcataagcagctaattcggttgaaccaatatgaccaatgaag |
33992699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 216 - 310
Target Start/End: Complemental strand, 33983035 - 33982941
Alignment:
| Q |
216 |
attgacttaccagaataccatttgcaaacctgactaggacagtcataacaagggcataagcagctaattcggttgaaccaatatgaccaatgaag |
310 |
Q |
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| T |
33983035 |
attgacttaccagaataccatttgcaaatctgactaggacagtcataacaagggaataggcagctaactcggttgaaccaatgtaaccaatgaag |
33982941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 33993054 - 33992995
Alignment:
| Q |
84 |
cgcaattgtatttgtgacatcaaggtttttgatgtctataatacaattgcgattgaggtag |
144 |
Q |
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| T |
33993054 |
cgcaattgtacttgtgacat-atggtttttgatatctataatactattgcgattgaggtag |
33992995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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