View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_13 (Length: 297)
Name: NF4653_low_13
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 10239934 - 10239664
Alignment:
| Q |
9 |
acatcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
108 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239934 |
acatcatcaatctcagcactaatactcaacacactcgatgacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
10239835 |
T |
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| Q |
109 |
tgtcccaaaactttgcaccagtcctagacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataag |
208 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239834 |
tgtcccaaaactttgcaccagtccttgacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataag |
10239735 |
T |
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| Q |
209 |
aaacggaccaaaccctcagttccttccacgtggaccttaccatctctttgacggtgacggcatgcttcatg |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239734 |
aaacggaccaaaccctcagttccttccacgtggaccttaccatctctttgacggtgacggcatgcttcatg |
10239664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 10231154 - 10230884
Alignment:
| Q |
9 |
acatcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10231154 |
acatcatcaatatcagcactaatactcaacacactcgatgacattatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
10231055 |
T |
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| Q |
109 |
tgtcccaaaactttgcaccagtcctagacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataag |
208 |
Q |
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| T |
10231054 |
tgtcccaaaactttgcaccagtcctagacgaactccctccaacacaatgtgtaatcatcaaaggtacactcccgccgtcactttacggtgcttacataag |
10230955 |
T |
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| Q |
209 |
aaacggaccaaaccctcagttccttccacgtggaccttaccatctctttgacggtgacggcatgcttcatg |
279 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10230954 |
aaacggaccaaacccacagttccttccacgtggaccctaccatctctttgacggtgacggcatgcttcatg |
10230884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 10254684 - 10254939
Alignment:
| Q |
22 |
cagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactt |
121 |
Q |
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|||||||| || |||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254684 |
cagcactactattcaacacattcgacgacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactt |
10254783 |
T |
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| Q |
122 |
tgcaccagtcctagacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataagaaacggaccaaac |
221 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254784 |
tgcaccagtccttgacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataagaaacggaccaaac |
10254883 |
T |
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| Q |
222 |
cctcagttccttccacgtggaccttaccatctctttgacggtgacggcatgcttca |
277 |
Q |
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|| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |
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| T |
10254884 |
ccacagttccttccacgtggaccctaccacctcttcgacggtgatggcatgcttca |
10254939 |
T |
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