View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_14 (Length: 294)
Name: NF4653_low_14
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 8055732 - 8055462
Alignment:
| Q |
18 |
caattgtcacctgcagtaagacagacacattcaatgagcacaaaaagttatgtgtatgtttgaatgctacactatgtgtcaaatatggtcggtgagaaaa |
117 |
Q |
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| T |
8055732 |
caattgtcacctgcagtaagacagacacattcaatgagcacaaaaagttatgtgtatgtttgaatgctacactatgtgtcaaatatggtgggtgagaaaa |
8055633 |
T |
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| Q |
118 |
gtacctgaatttcagacttggagagaccaggaacatccaagaaaaatatatactccttaggagtatccaaaatgtccactgggatactggaagcccttct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
8055632 |
gtacctgaatttcagacttggagagaccaggaacatccaagaaaaatatatactctttaggagtatccaaaatgtccaccgggatactagaagcccttct |
8055533 |
T |
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| Q |
218 |
tctgctctcatgattctcatgatcccttgaaggagtttcatgaacatgattcaacaaattgttcactacac |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8055532 |
tctgctctcatgattctcatgatcccttgaaggagtttcatgaacatgattcaagaaattgttcactacac |
8055462 |
T |
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