View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4653_low_15 (Length: 274)

Name: NF4653_low_15
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4653_low_15
NF4653_low_15
[»] scaffold0024 (1 HSPs)
scaffold0024 (31-118)||(107022-107109)
[»] chr8 (1 HSPs)
chr8 (32-121)||(42145684-42145773)
[»] chr3 (4 HSPs)
chr3 (44-129)||(52466136-52466221)
chr3 (39-121)||(17737356-17737438)
chr3 (39-100)||(3476091-3476152)
chr3 (61-118)||(3289910-3289967)
[»] chr4 (5 HSPs)
chr4 (67-129)||(12384825-12384887)
chr4 (33-115)||(35462276-35462358)
chr4 (31-94)||(13885229-13885292)
chr4 (46-117)||(9564844-9564915)
chr4 (48-121)||(15241985-15242058)
[»] chr2 (2 HSPs)
chr2 (39-116)||(38992610-38992687)
chr2 (81-129)||(27505245-27505293)
[»] chr1 (2 HSPs)
chr1 (39-100)||(52273095-52273156)
chr1 (32-92)||(23632953-23633013)
[»] scaffold0498 (1 HSPs)
scaffold0498 (42-118)||(10118-10194)
[»] chr7 (1 HSPs)
chr7 (24-98)||(32944762-32944836)
[»] scaffold0009 (1 HSPs)
scaffold0009 (73-121)||(222335-222383)
[»] scaffold0247 (1 HSPs)
scaffold0247 (59-121)||(297-359)
[»] chr6 (1 HSPs)
chr6 (61-127)||(28842332-28842398)
[»] chr5 (1 HSPs)
chr5 (61-121)||(19596364-19596424)


Alignment Details
Target: scaffold0024 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 107022 - 107109
Alignment:
Q  31 aataacacatcaatttcacatcatcaagtaattcacaaatttcacttagacaaataattcatcaattacactttgttaaataactcat 118  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||    
T  107022 aataacacatcaatttcacatcatcaaataactcacaaattacacttagtcaaataattcattaattacactttgttaaataactcat 107109  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 42145684 - 42145773
Alignment:
Q  32 ataacacatcaatttcacatcatcaagtaattcacaaatttcacttagacaaataattcatcaattacactttgttaaataactcatcaa 121  Q
    ||||||||||| |||||||||||||| ||||||| | ||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  42145684 ataacacatcattttcacatcatcaaataattcatacattacacttagtcaaataattcatcaattacacttcgttaaatgactcatcaa 42145773  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 52466221 - 52466136
Alignment:
Q  44 tttcacatcatcaagtaattcacaaatttcacttagacaaataattcatcaattacactttgttaaataactcatcaactatacat 129  Q
    |||||| ||||||  ||||||||||||| ||||||  ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  52466221 tttcacgtcatcagataattcacaaattacacttaatcaaataattcatcaattacacttcgttaaataactcatcaattatacat 52466136  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 17737356 - 17737438
Alignment:
Q  39 atcaatttcacatcatcaagtaattcacaaatttcacttagacaaataattcatcaattacactttgttaaataactcatcaa 121  Q
    ||||||||||||||||||| |||||||||||||  |||||  |||||| |||||||||||||||| |||||||| | ||||||    
T  17737356 atcaatttcacatcatcaaataattcacaaattatacttaatcaaatatttcatcaattacacttcgttaaatagcacatcaa 17737438  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 3476091 - 3476152
Alignment:
Q  39 atcaatttcacatcatcaagtaattcacaaatttcacttagacaaataattcatcaattaca 100  Q
    ||||||||||||||||||  || |||||||||  ||||||| ||||||||||||||||||||    
T  3476091 atcaatttcacatcatcatatagttcacaaatcacacttagtcaaataattcatcaattaca 3476152  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 3289910 - 3289967
Alignment:
Q  61 attcacaaatttcacttagacaaataattcatcaattacactttgttaaataactcat 118  Q
    ||||||||||| ||||||| |||||||||||  ||||||||||  |||||||||||||    
T  3289910 attcacaaattacacttagtcaaataattcactaattacacttcattaaataactcat 3289967  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 12384887 - 12384825
Alignment:
Q  67 aaatttcacttagacaaataattcatcaattacactttgttaaataactcatcaactatacat 129  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  12384887 aaattacacttagtcaaataattcatcaattacacttcgttaaataactcatcaactacacat 12384825  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 35462358 - 35462276
Alignment:
Q  33 taacacatcaatttcacatcatcaagtaattcacaaatttcacttagacaaataattcatcaattacactttgttaaataact 115  Q
    |||||||||||||| |||||||||| ||||||||||||| || | || |||||||||||||||||| ||||  ||||||||||    
T  35462358 taacacatcaattttacatcatcaaataattcacaaattacaataagtcaaataattcatcaattatacttcattaaataact 35462276  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 13885292 - 13885229
Alignment:
Q  31 aataacacatcaatttcacatcatcaagtaattcacaaatttcacttagacaaataattcatca 94  Q
    ||||| |||||||||||||||||||||||||||||||||||  | |||| ||||||||||||||    
T  13885292 aataatacatcaatttcacatcatcaagtaattcacaaattatatttagtcaaataattcatca 13885229  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 9564915 - 9564844
Alignment:
Q  46 tcacatcatcaagtaattcacaaatttcacttagacaaataattcatcaattacactttgttaaataactca 117  Q
    ||||| |||||| ||||| | ||||| || |||| |||||||||||| |||||||||||| |||||||||||    
T  9564915 tcacaacatcaattaatttagaaattacatttagtcaaataattcattaattacactttgctaaataactca 9564844  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 15242058 - 15241985
Alignment:
Q  48 acatcatcaagtaattcacaaatttcacttagacaaataattcatcaattacactttgttaaataactcatcaa 121  Q
    |||||||||| ||||||||||||| ||||||  ||||||||||||||| || ||||  ||||||| | ||||||    
T  15242058 acatcatcaaataattcacaaattacacttaatcaaataattcatcaactatacttcattaaatatcacatcaa 15241985  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 38992610 - 38992687
Alignment:
Q  39 atcaatttcacatcatcaagtaattcacaaatttcacttagacaaataattcatcaattacactttgttaaataactc 116  Q
    |||| |||||||| |||||  |||||||||| | ||||||| ||||||||||||||||||||||| ||||||||||||    
T  38992610 atcattttcacattatcaaacaattcacaaagtacacttagtcaaataattcatcaattacacttcgttaaataactc 38992687  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 27505293 - 27505245
Alignment:
Q  81 caaataattcatcaattacactttgttaaataactcatcaactatacat 129  Q
    |||||||||||| ||||||||||||||||||||||| | || |||||||    
T  27505293 caaataattcataaattacactttgttaaataactcttgaattatacat 27505245  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 52273095 - 52273156
Alignment:
Q  39 atcaatttcacatcatcaagtaattcacaaatttcacttagacaaataattcatcaattaca 100  Q
    ||||||||||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  52273095 atcaatttcacattatcaaataattcacaaattacacttagtcaaataattcatcaattaca 52273156  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 23633013 - 23632953
Alignment:
Q  32 ataacacatcaatttcacatcatcaagtaattcacaaatttcacttagacaaataattcat 92  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||| ||||    
T  23633013 ataacacatcattttcacatcatcaaataattcacaaattacacttagtcaaataaatcat 23632953  T

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Target: scaffold0498 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 10118 - 10194
Alignment:
Q  42 aatttcacatcatcaagtaattcacaaatttcacttagacaaataattcatcaattacactttgttaaataactcat 118  Q
    ||||| |||||||||| |||||||||||||  ||||   ||||||||||||||||||||||||||||||||| ||||    
T  10118 aattttacatcatcaaataattcacaaattatacttcatcaaataattcatcaattacactttgttaaataattcat 10194  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 32944762 - 32944836
Alignment:
Q  24 atcgttgaataacacatcaatttcacatcatcaagtaattcacaaatttcacttagacaaataattcatcaatta 98  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||  ||||||   ||||||||| |||||||    
T  32944762 atcgtggaataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 32944836  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 222335 - 222383
Alignment:
Q  73 cacttagacaaataattcatcaattacactttgttaaataactcatcaa 121  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  222335 cacttagtcaaataattcatcaattacacttcattaaataactcatcaa 222383  T

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Target: scaffold0247 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 297 - 359
Alignment:
Q  59 taattcacaaatttcacttagacaaataattcatcaattacactttgttaaataactcatcaa 121  Q
    ||||||| |||||  |||||| |||||||||||||||||||||||  | |||||| |||||||    
T  297 taattcataaattatacttagtcaaataattcatcaattacacttaatcaaataagtcatcaa 359  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 28842398 - 28842332
Alignment:
Q  61 attcacaaatttcacttagacaaataattcatcaattacactttgttaaataactcatcaactatac 127  Q
    |||||||| || ||||||| ||||||||| |||| | |||||| ||||||||||||| ||| |||||    
T  28842398 attcacaatttacacttagtcaaataatttatcattaacacttcgttaaataactcaacaattatac 28842332  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 19596424 - 19596364
Alignment:
Q  61 attcacaaatttcacttagacaaataattcatcaattacactttgttaaataactcatcaa 121  Q
    ||||||||||| ||  ||  ||||| |||||||||||| |||||||||||||| |||||||    
T  19596424 attcacaaattacatataatcaaatgattcatcaattatactttgttaaataattcatcaa 19596364  T

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