View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_17 (Length: 261)
Name: NF4653_low_17
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 23094806 - 23094696
Alignment:
| Q |
135 |
attgacatggttttattaagtcatccaatnnnnnnnncatagtaaacaagcaacccaaaactactaatatcatgttttctagagacattatcatactcca |
234 |
Q |
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| T |
23094806 |
attgccatggttctagtaagtcatccaataaaaaaaacatagtcatcaagcaacccaaaactactaatatcatgttttctagagacattatcatactcca |
23094707 |
T |
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| Q |
235 |
ccaagcttcat |
245 |
Q |
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||||||||||| |
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| T |
23094706 |
ccaagcttcat |
23094696 |
T |
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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 34200395 - 34200454
Alignment:
| Q |
186 |
aacccaaaactactaatatcatgttttctagagacattatcatactccaccaagcttcat |
245 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| |
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| T |
34200395 |
aacctaaaactactaatatcatgttttctagagacaatatcataatccaccaagcgtcat |
34200454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 18496808 - 18496867
Alignment:
| Q |
186 |
aacccaaaactactaatatcatgttttctagagacattatcatactccaccaagcttcat |
245 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| |
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| T |
18496808 |
aacctaaaactactaatatcatgttttctagagacaatatcataatccaccaagcgtcat |
18496867 |
T |
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