View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_19 (Length: 245)
Name: NF4653_low_19
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 5414780 - 5414563
Alignment:
| Q |
17 |
atgaatgtggctctgctattgacaaacaattgatgagaaaaactatttgagaagtagttatagtttgagtagatatatagtttcttaaacattaatttga |
116 |
Q |
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| T |
5414780 |
atgaatgtggctctgctattgacaaacaattgatgagaaaaactatttgagaagtagttatagtttgagtagatatatagtttcttaaacattaatttga |
5414681 |
T |
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| Q |
117 |
tatttcaacacaattcctttgttggaataaaatatatag----ttaaccccccttatatcatgaatttgataatattatgacaacaactcgaagtcatgg |
212 |
Q |
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| T |
5414680 |
tatttcaacacaattcctttgttggaataaaatatatagttaattaaccccccttatatcatgaatttgacaatattatgacaacaactcgaagtcatgg |
5414581 |
T |
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| Q |
213 |
ttccataatgtctaaaat |
230 |
Q |
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|||||||||||||||||| |
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| T |
5414580 |
ttccataatgtctaaaat |
5414563 |
T |
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