View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4653_low_2 (Length: 455)

Name: NF4653_low_2
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4653_low_2
NF4653_low_2
[»] chr3 (3 HSPs)
chr3 (18-442)||(8341648-8342072)
chr3 (82-442)||(26727247-26727604)
chr3 (34-140)||(8333037-8333143)
[»] scaffold0061 (1 HSPs)
scaffold0061 (34-443)||(29813-30228)
[»] scaffold0017 (2 HSPs)
scaffold0017 (34-443)||(168564-168979)
scaffold0017 (19-442)||(173574-174003)
[»] chr1 (6 HSPs)
chr1 (82-442)||(44785757-44786119)
chr1 (19-298)||(44144710-44144990)
chr1 (128-442)||(44611466-44611786)
chr1 (82-431)||(35898769-35899124)
chr1 (19-272)||(11544676-11544933)
chr1 (19-133)||(44612085-44612199)
[»] chr2 (2 HSPs)
chr2 (34-442)||(29228546-29228952)
chr2 (34-442)||(29341845-29342251)
[»] chr5 (10 HSPs)
chr5 (304-442)||(29508253-29508391)
chr5 (37-119)||(29508115-29508197)
chr5 (34-122)||(29507536-29507624)
chr5 (37-122)||(29507611-29507696)
chr5 (37-122)||(29507683-29507768)
chr5 (84-122)||(29507874-29507912)
chr5 (84-122)||(29507946-29507984)
chr5 (84-122)||(29508090-29508128)
chr5 (37-122)||(29507755-29507840)
chr5 (37-122)||(29507971-29508056)


Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 8342072 - 8341648
Alignment:
Q  18 cagagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattccca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  8342072 cagagattgcaataacgaaagatttccgagttggaaagggattgtaccaacaagatcattaagactgagattaaggtgttgcaattgtgagagattccca 8341973  T
Q  118 agttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat 217  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341972 agttgagtaggaatctttccctcataaccaccgtttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat 8341873  T
Q  218 tcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatatgaatcgtgtagatcaagcttttc 317  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  8341872 tcaaataactgaggtcaagatatgttagatgttacaactcagttattgaaggattgatttcaccactcaaataatgtgaatggtgtagatcaagcttttc 8341773  T
Q  318 aacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341772 aacataaccggtttgattgttgcattgaattcctttccatttgcagcaatctgcagttggaccgtccttccatgcggacaacatgccataatcatctcga 8341673  T
Q  418 acgccttgtttgaacgtgaggagtg 442  Q
    |||||||||||||||||||||||||    
T  8341672 acgccttgtttgaacgtgaggagtg 8341648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 82 - 442
Target Start/End: Complemental strand, 26727604 - 26727247
Alignment:
Q  82 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga 181  Q
    ||||||| |||||||||||| |||||||| || |||||||||| |||||||||| | | | ||    |||||||||||| |||||||||||| ||| |||    
T  26727604 ctgagatcaaggtgttgcaactgtgagagttttccaagttgagaaggaatcttctcattaaaaaaggcatttgagagattaaggtatcgtaaattgatga 26727505  T
Q  182 acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc 281  Q
    | || |||||||| ||||| || ||||| ||| |  ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26727504 aggagccaataaaatttgggatatgacctctaatcatcaatgaactaaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaca 26727405  T
Q  282 actcaaataatatgaatcgtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccg 381  Q
    | | |   ||||  || | || | ||||||  ||| ||||||||| ||||  |||||||||   | |||  |||||||||||||||| ||| || || |     
T  26727404 attta---aatacaaaccatgcaaatcaagtctttgaacataacctgtttcgttgttgcataagactcccatccatttgcagcaatctgcattttgatca 26727308  T
Q  382 tccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtg 442  Q
    |||||||||| |||||| |||||||| |||||| ||| |||||||||||| ||||||||||    
T  26727307 tccttccatgtggacaaaatgccatactcatcttgaaggccttgtttgaatgtgaggagtg 26727247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 8333143 - 8333037
Alignment:
Q  34 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 133  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8333143 gaaagattttcgagttggaaagggatttttccaacaagatcattaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 8333044  T
Q  134 tcccctc 140  Q
    | |||||    
T  8333043 ttccctc 8333037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 34 - 443
Target Start/End: Original strand, 29813 - 30228
Alignment:
Q  34 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 133  Q
    |||||||||||||||||||||||||||  ||||   ||||||||    || |||| ||| ||| |||||||||| ||||||||||||||| |||||||||    
T  29813 gaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaataggaatct 29912  T
Q  134 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 233  Q
    |||| ||||||||||||  |||||||||||||||| |||| |||||||  ||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  29913 tcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgaccactggtattcaaatatctgaggtc 30012  T
Q  234 tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagcttttcaacataaccg 327  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||      |  ||| | || ||||||||||||||||||||||||    
T  30013 aagatattttagatgttgcaactcagttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccg 30112  T
Q  328 gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt 427  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| ||||| |||||| ||| ||||||||    
T  30113 gtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggccttgtt 30212  T
Q  428 tgaacgtgaggagtga 443  Q
    | || |||| ||||||    
T  30213 tcaaagtgacgagtga 30228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 34 - 443
Target Start/End: Complemental strand, 168979 - 168564
Alignment:
Q  34 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 133  Q
    |||||||||||||||||||||||||||  ||||   ||||||||    || |||| ||| ||| |||||||||| ||||||||||||||| |||||||||    
T  168979 gaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaataggaatct 168880  T
Q  134 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 233  Q
    |||| ||||||||||||  |||||||||||||||| |||| |||||||  ||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  168879 tcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgaccactggtattcaaatatctgaggtc 168780  T
Q  234 tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagcttttcaacataaccg 327  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||      |  ||| | || ||||||||||||||||||||||||    
T  168779 aagatattttagatgttgcaactcagttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccg 168680  T
Q  328 gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt 427  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| ||||| |||||| ||| ||||||||    
T  168679 gtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggccttgtt 168580  T
Q  428 tgaacgtgaggagtga 443  Q
    | || |||| ||||||    
T  168579 tcaaagtgacgagtga 168564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 174003 - 173574
Alignment:
Q  19 agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa 118  Q
    ||||| ||||| || |||||||||||||||||||||||||||  |||||  || |||||  | || |||| ||||| |  ||||||||| ||||| ||||    
T  174003 agagactgcaacaatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaagatcaaggtatcacaattgtgatagatttccaa 173904  T
Q  119 gttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtatt 218  Q
    ||| |  ||||| |||||| ||||||  ||||||||| ||||||||||  || || |||||||| || |||||||||||||  ||||||| |||||||||    
T  173903 gttcaaaaggaaccttcccatcataatgaccatttgacagatcaaggtgccgcaacttgctgaaggagccaataaattttgagatttgactactagtatt 173804  T
Q  219 caaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagc 312  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |      |  ||  | || ||||||||     
T  173803 caaataactgaggtctaaatatgttagattttgtaactcagttattgaaggattgatttcaccactcaaatgacgtgtttccgagccatgcagatcaaga 173704  T
Q  313 ttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcat 412  Q
     ||| ||||||||| ||||   |||||||||||| ||| |||||||||||||||||  || || ||||| ||||||||| ||||||||||||||||||||    
T  173703 ctttgaacataaccagtttcgatgttgcattgaactcccttccatttgcagcaatcttcattttgaccgcccttccatgtggacaacatgccataatcat 173604  T
Q  413 ctcgaacgccttgtttgaacgtgaggagtg 442  Q
    || ||| |||||||||||||||||||||||    
T  173603 cttgaaggccttgtttgaacgtgaggagtg 173574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 82 - 442
Target Start/End: Original strand, 44785757 - 44786119
Alignment:
Q  82 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga 181  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||  | |||||||||  |||||| ||||||||||||||||||||||    
T  44785757 ctgagatcaaggtgtcgcaattgtgagagattcccaagttgagtaggaatctttccaccgtaaccaccaactgagaggtcaaggtatcgtaagttgctga 44785856  T
Q  182 acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc 281  Q
    | |||||||||||||||||||||||| || ||||| |||||| |||||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||    
T  44785857 aggatccaataaattttggaatttgatcattagtaatcaaatgactgaggtctagatattttagatgtcgcagctcagttattgaaggattgattacacc 44785956  T
Q  282 actcaaataatatgaatcgtgta-gatcaagcttttcaac--ataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttgga 378  Q
    ||||||||||  ||  || || |  ||  || || | |||  ||| || ||||| ||||||||||||| ||||| ||||||||| ||||| ||| |||||    
T  44785957 actcaaataacgtgtttc-tgaaccatgcagattctgaacatatatccagtttggttgttgcattgaactccttcccatttgcaacaatctgcatttgga 44786055  T
Q  379 ccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtg 442  Q
    ||||| ||| ||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  44786056 ccgtctttcgatgtggacaacatgccataatcatcttgaatgccttgtttgaatgtgaggagtg 44786119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 44144990 - 44144710
Alignment:
Q  19 agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa 118  Q
    ||||| |||||||| |||||||||||||||||||||||||||  |||||  || |||||  | || | || ||||||| ||||| |||||||||||||||    
T  44144990 agagactgcaataatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaaaatcaaggtgtcgcaatcgtgagagattcccaa 44144891  T
Q  119 gttgagtaggaatcttcccctcataaccaccatttgagagatcaa-ggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat 217  Q
    |||||| |||||||||||| ||||||||||||  ||||||||||| ||| |||||| |||||||| || |||||||||||||| |||||||||| |||||    
T  44144890 gttgagcaggaatcttcccatcataaccaccaactgagagatcaaaggtgtcgtaacttgctgaaggagccaataaattttgggatttgaccaccagtat 44144791  T
Q  218 tcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatatgaat 298  Q
    |||||||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  44144790 tcaaataacttaggtctagatgtgttagatgttgcagcacagttattgaaggattgatttcaccactcaaatcatatgaat 44144710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 128 - 442
Target Start/End: Complemental strand, 44611786 - 44611466
Alignment:
Q  128 gaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataact 227  Q
    |||||||||| ||| |||||| |||||||||||||||||||| |||||||| ||| || |||||||||||||| ||||||||||||||||||| ||||||    
T  44611786 gaatcttcccatcaaaaccactatttgagagatcaaggtatcttaagttgcagaaggagccaataaattttgggatttgaccactagtattcagataact 44611687  T
Q  228 gaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaa------ataatatgaatcgtgtagatcaagcttttcaaca 321  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||         ||| ||  | || ||||||||  ||| ||||    
T  44611686 gaggtttagatatgttagatgttgcaactcagttattgaaggattgatttcaccaaacaatcggcgtcgatacgagccatgcagatcaagactttgaaca 44611587  T
Q  322 taaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgc 421  Q
    ||||| |||||| |||||||||||| ||| ||||||||||||||||| |||  || ||| |||||||||| ||||||||| ||||| |||||| ||| |     
T  44611586 taaccagtttgaatgttgcattgaactcccttccatttgcagcaatctgcatctgaaccctccttccatgtggacaacataccatactcatcttgaaggt 44611487  T
Q  422 cttgtttgaacgtgaggagtg 442  Q
    ||||||| |||||||||||||    
T  44611486 cttgtttaaacgtgaggagtg 44611466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 82 - 431
Target Start/End: Complemental strand, 35899124 - 35898769
Alignment:
Q  82 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga 181  Q
    ||||||| ||||| ||||||   ||||||||||| ||| |||| |||||||||||| ||  |||||| |||||||||||||| |||||| ||||||||||    
T  35899124 ctgagatcaaggtattgcaacaatgagagattcctaagctgagcaggaatcttcccatcgaaaccactatttgagagatcaatgtatcgcaagttgctga 35899025  T
Q  182 acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc 281  Q
    | || |||||||||||||| ||||||||||||||||||||| |||  ||||||| |||||| ||||||||||| ||||||||| |||| |||||||  ||    
T  35899024 aggagccaataaattttgggatttgaccactagtattcaaaaaaccaaggtctaaatatgtaagatgttgcaattcagttattaaagggttgattttgcc 35898925  T
Q  282 actcaaata------atatgaatcgtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagtt 375  Q
     ||||||||       | |||| | || | ||||||  ||| || |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||| ||    
T  35898924 tctcaaatagcgtgtttttgaaccatgcaaatcaagactttgaatataaccagtttggttgttgcattgaactcctttccatttgcagcaatctgcattt 35898825  T
Q  376 ggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaa 431  Q
    ||||  || |||||||  |||||||| || || || ||| ||| ||||||||||||    
T  35898824 ggactatcattccatgtagacaacataccgtactcgtcttgaaggccttgtttgaa 35898769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 11544676 - 11544933
Alignment:
Q  19 agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa 118  Q
    ||||| ||||| || ||||||||||||||||||||||| |||  |||||  || |||||  | || |||| |||||||  ||| ||||||||||| ||||    
T  11544676 agagactgcaacaatgaaagatttccgagttggaaaggaatttctccaatgagttcattgtagctaagatcaaggtgtctcaactgtgagagattgccaa 11544775  T
Q  119 gttgagtag----gaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactag 214  Q
    |||||| ||    |||||||| | | ||||  || ||||||||||| |||||||| ||| ||| | || || |||||||||||||| ||||||     |     
T  11544776 gttgagaaggaatgaatcttcgcatgataataactatttgagagattaaggtatcataacttggttaaggagccaataaattttgggatttgagtgaaaa 11544875  T
Q  215 tattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggatt 272  Q
    || ||| |  ||||||||||| |||| |||||||||| ||||||||||||||||||||    
T  11544876 taatcatactactgaggtctaaatattttagatgttgtaactcagttattgaaggatt 11544933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 44612199 - 44612085
Alignment:
Q  19 agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa 118  Q
    ||||| ||||| || ||||||||||| |||||||||||||||  ||||   || |||||    || |||| ||||||| |||||||||||||||||||||    
T  44612199 agagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaa 44612100  T
Q  119 gttgagtaggaatct 133  Q
    |||||| ||||||||    
T  44612099 gttgagaaggaatct 44612085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 34 - 442
Target Start/End: Original strand, 29228546 - 29228952
Alignment:
Q  34 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 133  Q
    |||||||||||||||||||||||||||| |||||  || |||||    || |||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  29228546 gaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatct 29228645  T
Q  134 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 233  Q
    |||| ||||||  |||  |||||||||  |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||    
T  29228646 tcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaataactgaggtc 29228745  T
Q  234 tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatat------gaatcgtgtagatcaagcttttcaacataaccg 327  Q
    ||||||| |||||||||||| |||||||| ||||| ||| ||||||||||||||||| | |      |||   || ||||||||  ||| |||||||||     
T  29228746 tagatattttagatgttgcagctcagttagtgaagaatttatttcaccactcaaatagtttgtttccgaacgatgcagatcaagactttgaacataacca 29228845  T
Q  328 gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt 427  Q
    ||||| |||||||||        || ||||||||| ||||| |||||||||||||| ||||||| | |||||||| |||  ||||||  || ||||||||    
T  29228846 gtttggttgttgcat--------ttcccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatgacattctcatctttaaggccttgtt 29228937  T
Q  428 tgaacgtgaggagtg 442  Q
    ||||| |||| ||||    
T  29228938 tgaacctgagcagtg 29228952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 34 - 442
Target Start/End: Original strand, 29341845 - 29342251
Alignment:
Q  34 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 133  Q
    |||||||||||||||||||||||||||| |||||  || |||||    || |||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  29341845 gaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatct 29341944  T
Q  134 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 233  Q
    |||| ||||||  |||  |||||||||  |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||    
T  29341945 tcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaataactgaggtc 29342044  T
Q  234 tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatat------gaatcgtgtagatcaagcttttcaacataaccg 327  Q
    ||||||| |||||||||||| |||||||| ||||| ||| ||||||||||||||||| | |      |||   || ||||||||  ||| |||||||||     
T  29342045 tagatattttagatgttgcagctcagttagtgaagaatttatttcaccactcaaatagtttgtttccgaacgatgcagatcaagactttgaacataacca 29342144  T
Q  328 gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt 427  Q
    ||||| |||||||||        || ||||||||| ||||| |||||||||||||| ||||||| | |||||||| |||  ||||||  || ||||||||    
T  29342145 gtttggttgttgcat--------ttcccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatgacattctcatctttaaggccttgtt 29342236  T
Q  428 tgaacgtgaggagtg 442  Q
    ||||| |||| ||||    
T  29342237 tgaacctgagcagtg 29342251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 304 - 442
Target Start/End: Original strand, 29508253 - 29508391
Alignment:
Q  304 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 403  Q
    ||||||||  ||| ||||||||| ||||||||||||||| ||| ||| |||||||||||||||||  || ||||  |||||||||||| |||||||||||    
T  29508253 agatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgc 29508352  T
Q  404 cataatcatctcgaacgccttgtttgaacgtgaggagtg 442  Q
    |||| |||||| ||| ||||| ||||||  |||||||||    
T  29508353 catactcatcttgaaggccttctttgaatttgaggagtg 29508391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 29508115 - 29508197
Alignment:
Q  37 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaag 119  Q
    |||||||| |||||||| || |||| |||||  || ||||||  |||||||| |||||||||||||||||||||||| |||||    
T  29508115 agatttccaagttggaagggaattgctccaatgagttcattacctctgagatcaaggtgttgcaattgtgagagatttccaag 29508197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 29507536 - 29507624
Alignment:
Q  34 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    |||||||||  |||||| |||||||||| |||||  || |||||  | ||||||| ||||||||| |||||||||||||| ||||||||    
T  29507536 gaaagattttggagttgtaaagggattgctccaattagttcattgtagctgagatcaaggtgttgtaattgtgagagatttccaagttg 29507624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 29507611 - 29507696
Alignment:
Q  37 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    |||||||| |||||||| || |||| |||||  || |||||    ||||||| |||||||||||||||||||||||| ||||||||    
T  29507611 agatttccaagttggaagggaattgctccaatgagttcattttcgctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 29507683 - 29507768
Alignment:
Q  37 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    |||||||| |||||||| || |||| |||||  || |||||    ||||||| |||||||||||||||||||||||| ||||||||    
T  29507683 agatttccaagttggaagggaattgctccaatgagttcatttctgctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 29507874 - 29507912
Alignment:
Q  84 gagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29507874 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 29507946 - 29507984
Alignment:
Q  84 gagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29507946 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 29508090 - 29508128
Alignment:
Q  84 gagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29508090 gagatcaaggtgttgcaattgtgagagatttccaagttg 29508128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 29507755 - 29507840
Alignment:
Q  37 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    |||||||| |||||||| || |||  |||||  || |||||  | ||||||| ||| |||||||||||||||||||| ||||||||    
T  29507755 agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg 29507840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 29507971 - 29508056
Alignment:
Q  37 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    |||||||| |||||||| || |||  |||||  || |||||  | ||||||| ||| |||||||||||||||||||| ||||||||    
T  29507971 agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg 29508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University