View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_20 (Length: 245)
Name: NF4653_low_20
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 17455919 - 17456051
Alignment:
| Q |
19 |
agtcatgacttcaggatctcttaaaagcctttttcggcacaatacattgacaacgaggaggtatggaagctgccacaaaacgtaagctgctaagggtacc |
118 |
Q |
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| T |
17455919 |
agtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacattaacaatgaggaggtatagaagctgccacagaatgtaagctgctaagggtacc |
17456018 |
T |
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| Q |
119 |
agaaacatccatgtccaaatataggatttatct |
151 |
Q |
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| T |
17456019 |
agaaacatccatgtccaaatataggatttatct |
17456051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 17805269 - 17805419
Alignment:
| Q |
19 |
agtcatgacttcaggatctcttaaaagcctttttcggcacaatacattgacaacgaggaggtatggaagctgccacaaaacgtaagctgctaagggtacc |
118 |
Q |
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|||||||||||| ||||||||||||| || || ||||| || |||||||||| |||| |||| ||| ||||||||| |||| || ||||||| ||| |
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| T |
17805269 |
agtcatgacttcgggatctcttaaaaaccgttgtcggcgtaagacattgacaatgaggtagtatagaacctgccacaaggtgtaaactactaagggaacc |
17805368 |
T |
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| Q |
119 |
agaaacatccatgtccaaatataggatttatcttcaacataaggccatgta |
169 |
Q |
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| T |
17805369 |
agaaacagccatgtacatagataggatttatcttcaatataaggccatgta |
17805419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 52142715 - 52142566
Alignment:
| Q |
20 |
gtcatgacttcaggatctcttaaaagcctttttcggcacaatacattgacaacgaggaggtatggaagctgccacaaaacgtaagctgctaagggtacca |
119 |
Q |
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| T |
52142715 |
gtcatgacttcaggatctcttaaaagcctttgtcggcgtaagacattgacaatgaggaagtatagaacctgccacagaatgtaagctactaagggaacca |
52142616 |
T |
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| Q |
120 |
gaaacatccatgtccaaatataggatttatcttcaacataaggccatgta |
169 |
Q |
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| T |
52142615 |
gaaacagccatgtccaaagataggatttatcttcaacataaggccatgta |
52142566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 52142534 - 52142498
Alignment:
| Q |
174 |
cttcaaaggtagcaggattccaccacctaatggtaaa |
210 |
Q |
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| T |
52142534 |
cttcaaaagtagcaggattccaccatctaatggtaaa |
52142498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 775372 - 775479
Alignment:
| Q |
19 |
agtcatgacttcaggatctcttaaaagcctttttcggcacaatacattgacaacgaggaggtatggaagctgccacaaaacgtaagctgctaagggtacc |
118 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||| |||||||||||| || ||||||||||||||||||| |
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| T |
775372 |
agtcatgacttcaggatctcttaaaagccgttttcggcacaagacattaacaatgaggaggtatagaagctgccacataatgtaagctgctaagggtacc |
775471 |
T |
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| Q |
119 |
agaaacat |
126 |
Q |
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|||||||| |
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|
| T |
775472 |
agaaacat |
775479 |
T |
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