View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_27 (Length: 238)
Name: NF4653_low_27
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15848512 - 15848729
Alignment:
| Q |
1 |
ttcgaccagtaatagtgattttctggtgtccataaactagaaattcccaagtttgggacctcaacggctttctgatcagtttcttccgatccaataaact |
100 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15848512 |
ttcgaccagtaatagtgattctcaggtgtccataaactagaaattcccaagtttgggacctcaacggctttctgatcagtttcttctgatccaataaact |
15848611 |
T |
|
| Q |
101 |
gaattgaaaacatgtagaaaagaaattaatatcactgtataaccaccaaataacattaatcctcattcataaatgtattatcttgaaccatttttcaatc |
200 |
Q |
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|||||| ||||||||||||||||||| |||| | |||||| ||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
15848612 |
gaattgcaaacatgtagaaaagaaatgaataacgttgtata---accaaataatattaatccttattcataaatgtattaacttgaaccatttttcaatc |
15848708 |
T |
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| Q |
201 |
aacctataattctaaataacg |
221 |
Q |
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||||||||||| ||||||||| |
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| T |
15848709 |
aacctataattataaataacg |
15848729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 47440029 - 47439912
Alignment:
| Q |
4 |
gaccagtaatagtgattttctggtgtccataaactagaaattcccaagtttgggacctcaacggctttctgatcagtttcttccgatccaataaactgaa |
103 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||||||| |
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| T |
47440029 |
gaccagtgatagtgattttctggtgtccataaactagtaattcccaattttgggacctcatcagctttctgatcagtttctttcgatccaataaactgaa |
47439930 |
T |
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| Q |
104 |
ttgaaaacatgtagaaaa |
121 |
Q |
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||| |||||||||||||| |
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| T |
47439929 |
ttgcaaacatgtagaaaa |
47439912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 10701338 - 10701220
Alignment:
| Q |
4 |
gaccagtaatagtgattttctggtgtccataaactagaaattcccaagtttgggacctcaacggctttctgatcagtttcttccgatccaataaactgaa |
103 |
Q |
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||||||| |||||||||||||||||||||||| |||| ||||||||| ||||| ||| || | ||||||||||||||||||| ||||||||||||||||| |
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| T |
10701338 |
gaccagtgatagtgattttctggtgtccataagctagtaattcccaattttggtaccccatcagctttctgatcagtttctttcgatccaataaactgaa |
10701239 |
T |
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| Q |
104 |
ttgaaaacatgtagaaaag |
122 |
Q |
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||| ||||||||||||||| |
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| T |
10701238 |
ttgcaaacatgtagaaaag |
10701220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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