View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_28 (Length: 236)
Name: NF4653_low_28
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 35490942 - 35491162
Alignment:
| Q |
16 |
ctattaacgccgcaatatacaaggaagatgtgaacaaagtaaggagttggttgtcaaatttgcaataattgctatcatgtatagattcatctttcatttt |
115 |
Q |
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| T |
35490942 |
ctattaacgccgcaatatacaaggaagatgtgaacaaagtaaggagttggttgtcaaatttgcaataattgctatcatgtctagattcatctttcatttt |
35491041 |
T |
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| Q |
116 |
cttgtaaacactagggaagaattttaccaaaaatggttccatggaagtcactcctcctgtaataccaagatcataaccaaaaagaagacctcccatggct |
215 |
Q |
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| T |
35491042 |
cttgtaaacactggggaagaatttaaccaaaaatggttccatggaagtcactcctcctgtaataccaagatcataaccaaaaagaagacctcccatggct |
35491141 |
T |
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| Q |
216 |
gcgaccaaacatgtgacaaac |
236 |
Q |
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| T |
35491142 |
gcgaccaaacatgtgacaaac |
35491162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 14231828 - 14231752
Alignment:
| Q |
153 |
tccatggaagtcactcctcctgtaataccaagatcataaccaaaaagaagacctcccatggctgcgaccaaacatgt |
229 |
Q |
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| T |
14231828 |
tccatagaagtcacccctccagtaataccaagatcataaccgaaaagaagacctcccattgcagctacaaaacatgt |
14231752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 14241503 - 14241427
Alignment:
| Q |
153 |
tccatggaagtcactcctcctgtaataccaagatcataaccaaaaagaagacctcccatggctgcgaccaaacatgt |
229 |
Q |
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||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||| || || || |||||||| |
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| T |
14241503 |
tccatagaagtcacccctccagtaataccaagatcataaccgaaaagaagacctcccattgcagctacaaaacatgt |
14241427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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