View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_3 (Length: 423)
Name: NF4653_low_3
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 35220008 - 35220394
Alignment:
| Q |
17 |
aataagagcactgtaaaaaagatttgatgttaccaagacaggaccacatagattgtaataaaaatcatgctaataatttagcatgtctctattcataatt |
116 |
Q |
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| T |
35220008 |
aataagagcactgcaaaaaagatttgatgttagcaagacaggaccacatagattgtaataaaaatcatgctaataatttagcatgtctctattcataatt |
35220107 |
T |
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| Q |
117 |
ccgacaataatcattgctagttgctattatgtcaaggtttttagnnnnnnnnnttacttgtactttggtatacgtaatactttctattatgccatgcttc |
216 |
Q |
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| T |
35220108 |
ccgacaataatcattgctagttgctattgtgtcaaggtttttagaaaaaaaa-ttacttgtactttggtatacgtaatactttctattatgccatgcttc |
35220206 |
T |
|
| Q |
217 |
caataagccatgtatgcttcacaaatgtgttgactattaagcagaataattgaatcaacattttatgatatcgtttatctgtaccaaatcattgtatttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35220207 |
caataagccatgtatgcttcacaaatgtgttgactattaagcagaataattgaatcaacattttatgatatcgtttatctgtaccaaatcattgtatttt |
35220306 |
T |
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| Q |
317 |
tggtgcaattgtagtattaatagaatagagtggtcggatgaataaaagttggattacagagactacgaaacaatgtgcgaaagaaattgtagt |
409 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
35220307 |
tggtgcaattgtagtatt-----aacagagtggtcggatgaataaaagttggattagagagactacaaaacaatgtgcgaaagaaattgtagt |
35220394 |
T |
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