View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4653_low_36 (Length: 207)

Name: NF4653_low_36
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4653_low_36
NF4653_low_36
[»] chr1 (10 HSPs)
chr1 (1-192)||(12192347-12192538)
chr1 (1-192)||(12879053-12879244)
chr1 (4-117)||(12886416-12886529)
chr1 (4-112)||(12941556-12941664)
chr1 (5-67)||(12977462-12977524)
chr1 (4-77)||(12949594-12949667)
chr1 (4-76)||(12955233-12955305)
chr1 (1-67)||(19756976-19757042)
chr1 (5-78)||(12922950-12923023)
chr1 (4-78)||(12915872-12915946)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 12192538 - 12192347
Alignment:
Q  1 ttggctttaattaatatctctaataaaccttgaattgaaacagagggtaccaagtaagttttcaagagaatacttgaacgagttcgaagggattgcaagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12192538 ttggctttaattaatatctctaataaaccttgaattgaaacagaggataccaagtaagttttcaagagaatacttgaacgagttcgaagggattgcaagg 12192439  T
Q  101 ataagggttggtgatgatagaacttggaaggtgaatgtgaagtttgattatgcaaacagaagttctattgtgaatgctggttggaatttatt 192  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12192438 attagggttggtgatgatagaacttggaaggtgaatgtgaagtttgattatgcaaacagaagttctattgtgagtgctggttggaatttatt 12192347  T

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Target: chr1; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 12879053 - 12879244
Alignment:
Q  1 ttggctttaattaatatctctaataaaccttgaattgaaacagagggtaccaagtaagttttcaagagaatacttgaacgagttcgaagggattgcaagg 100  Q
    ||||||||||||||||||||||| |||||  |||||||||||| || ||||||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  12879053 ttggctttaattaatatctctaacaaaccaagaattgaaacagtggataccaacaaagttttcaagagaatacttgaacgagttcgaagggtttgcaagg 12879152  T
Q  101 ataagggttggtgatgatagaacttggaaggtgaatgtgaagtttgattatgcaaacagaagttctattgtgaatgctggttggaatttatt 192  Q
     ||||||||||||| |||||| ||||||||||||||||||||||||||||||  || ||| |||||||| ||||||  ||||||||||||||    
T  12879153 ttaagggttggtgaggatagagcttggaaggtgaatgtgaagtttgattatggtaaaagatgttctattctgaatgtaggttggaatttatt 12879244  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 12886529 - 12886416
Alignment:
Q  4 gctttaattaatatctctaataaaccttgaattgaaacagagggtaccaagtaagttttcaagagaatacttgaacgagttcgaagggattgcaaggata 103  Q
    |||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||||||||||||| |||||||| | ||  |||| | |||||  |||    
T  12886529 gctttaattaatatctctaataaactatgatttgaaacagtgggtaccaagtaagttttcaagagaacacttgaacaattttaaaggaactgcaacaata 12886430  T
Q  104 agggttggtgatga 117  Q
    ||||||||| ||||    
T  12886429 agggttggtaatga 12886416  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 12941556 - 12941664
Alignment:
Q  4 gctttaattaatatctctaataaaccttgaattgaaacagagggtaccaagtaagttttcaagagaatacttgaacgagttcgaagggattgcaaggata 103  Q
    |||||||||||||||||||||||||| | | ||||||||| || ||||| || |||||||||||||| |||||||||| ||  |||||| |||||   ||    
T  12941556 gctttaattaatatctctaataaaccattatttgaaacagtggttaccatgtgagttttcaagagaacacttgaacgattttaaagggactgcaacagta 12941655  T
Q  104 agggttggt 112  Q
    |||||||||    
T  12941656 agggttggt 12941664  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 12977524 - 12977462
Alignment:
Q  5 ctttaattaatatctctaataaaccttgaattgaaacagagggtaccaagtaagttttcaaga 67  Q
    |||||| ||||||||||||||||||||||||||||| ||||| |||||||| | |||||||||    
T  12977524 ctttaactaatatctctaataaaccttgaattgaaatagaggataccaagtgacttttcaaga 12977462  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 12949594 - 12949667
Alignment:
Q  4 gctttaattaatatctctaataaaccttgaattgaaacagagggtaccaagtaagttttcaagagaatacttga 77  Q
    |||||||||||||||||||||||||| | | ||||||||| || ||||| || |||||||||||||| ||||||    
T  12949594 gctttaattaatatctctaataaaccattatttgaaacagtggttaccatgtgagttttcaagagaacacttga 12949667  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 12955233 - 12955305
Alignment:
Q  4 gctttaattaatatctctaataaaccttgaattgaaacagagggtaccaagtaagttttcaagagaatacttg 76  Q
    |||||||||||||||||||||||||| | | ||||||||| || ||||| || |||||||||||||| |||||    
T  12955233 gctttaattaatatctctaataaaccattatttgaaacagtggttaccacgtgagttttcaagagaacacttg 12955305  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 19756976 - 19757042
Alignment:
Q  1 ttggctttaattaatatctctaataaaccttgaattgaaacagagggtaccaagtaagttttcaaga 67  Q
    |||||||||  || |||||||||||||||||||||||||| ||||| |||||||| | |||||||||    
T  19756976 ttggctttacatattatctctaataaaccttgaattgaaatagaggataccaagtgacttttcaaga 19757042  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 12923023 - 12922950
Alignment:
Q  5 ctttaattaatatctctaataaaccttgaattgaaacagagggtaccaagtaagttttcaagagaatacttgaa 78  Q
    ||||||| ||||||||||||||| | ||| ||||||||| || |||||| | |||||||||||||| |||||||    
T  12923023 ctttaatcaatatctctaataaaacatgatttgaaacaggggataccaattgagttttcaagagaacacttgaa 12922950  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 12915946 - 12915872
Alignment:
Q  4 gctttaattaatatctctaataaaccttgaattgaaacagagggtaccaagtaagttttcaagagaatacttgaa 78  Q
    |||||||||| ||| ||||||||||| | | ||||||||| || |||||  | |||||||||||||| |||||||    
T  12915946 gctttaattattatatctaataaaccattatttgaaacagtggataccatttgagttttcaagagaacacttgaa 12915872  T

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