View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_4 (Length: 390)
Name: NF4653_low_4
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 195 - 374
Target Start/End: Complemental strand, 6885086 - 6884907
Alignment:
| Q |
195 |
acaaaacttttgtattaaaattgttatatctggttaataattttgtattgttattcccaccaaagtttttcgattttggttaataatttttgttctcatg |
294 |
Q |
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| T |
6885086 |
acaaaacttttgtattaaaattgttatatctggttaataattttgtattgttattcccaccaaagtttttcgattttcgttaataatttttgttctcatg |
6884987 |
T |
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| Q |
295 |
tgttgttacagaaattgttatatctggtggcatgtcaatacctcaagtaatgactactggagatgctcatgccaaacttg |
374 |
Q |
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| T |
6884986 |
tgttgatacagaaattgttatatctggtggcatgtcaatacctcaagtaatgactactggagatgctcatgccaaacttg |
6884907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 6885233 - 6885097
Alignment:
| Q |
1 |
agagctttattgtgtttatattcccaccaatcacttgtaccttggagatatttttctcgttagcccaaatgatattttgaggcctaatctctctgttcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6885233 |
agagctttattgtgtttatattcccaccaatcacctgtaccttggagatatttttctcgttagcccaaatgatattttgaggcctaatctctctgttcgt |
6885134 |
T |
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| Q |
101 |
gaaggaataggtatgtataaagttccttgccacataa |
137 |
Q |
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| T |
6885133 |
gaaggaataggtatgtataaagttccttgccacataa |
6885097 |
T |
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