View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_7 (Length: 365)
Name: NF4653_low_7
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 359
Target Start/End: Original strand, 27922985 - 27923329
Alignment:
| Q |
15 |
agaaacaatttgtttatatagttgtttcaaaaaaggaagccagtgttgtcctaaccaggaaggacgatgaaacccaacactaggtatactttatgaacaa |
114 |
Q |
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| T |
27922985 |
agaaacaatttgtttatatagttgtttcaaaaaaggaagccagtgttgtcctaaccagggaggacgatgaaacccaacactaggtatactttatgaacaa |
27923084 |
T |
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| Q |
115 |
agtactcaaagggaccgaggtaagacaaaaaatcgaaaaggttgccttagccctgatgacacctacgagaaagctttgtcgagacttcatggcctaccct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
27923085 |
agtactcaaagggaccgaggtaagacaaaaaatcgaaaaggttgccttagccctgatgatacctacaagaaagctttgtcgagacttcatggcctaccct |
27923184 |
T |
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| Q |
215 |
actgtggtgtggattaaccaacccattaaacacatgttattcataccagattttgcctagaaaatgacaaaatgggcactggaactctccaaatttgaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
27923185 |
actgtggtgtggattaaccaacccattaaacacatgttgttcataccagattttgcctagcaaatgacaaaatgggcactggaactctccaaattcgaaa |
27923284 |
T |
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| Q |
315 |
ttacatttgaatgcctcaaaactcttgtaagctaagtattatcta |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27923285 |
ttacatttgaatgcctcaaaactcttgtaagctaagtattatcta |
27923329 |
T |
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