View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4653_low_8 (Length: 342)
Name: NF4653_low_8
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4653_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 34819971 - 34819671
Alignment:
| Q |
1 |
gagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaaagaagaaagggaag |
100 |
Q |
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| T |
34819971 |
gagtatcaccaaaaatgatgatggtacgtatgcggtggttttgcaagctaagattgaccatcaactcgttgaggcatgtcctttaaagaagaaagggaag |
34819872 |
T |
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| Q |
101 |
agttatgaaggcgaggccaacaagaagaaggtcgagtgcgttcttgaggttgagatcggcggctccttgtggaacaggaacttcgatcgtgctggcttcg |
200 |
Q |
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||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34819871 |
agtgataaaggcgaggccaacaagaagaatgtcgagtgcgttcttgaggttgagatcggcggctccttgtggaacaggaacttcgatcgtgctggcttcg |
34819772 |
T |
|
| Q |
201 |
tgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatcactccaatatgtttcatgatgctagtgtttcttgtttgcgctctgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34819771 |
tgaaggatcatttcaacctttatgaagattttgaggcaacaaggaagtctaatcactccaatatgtttcatgatgctagtgtttcttgtttgcgctctgt |
34819672 |
T |
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| Q |
301 |
g |
301 |
Q |
| |
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| |
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| T |
34819671 |
g |
34819671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 34820243 - 34820119
Alignment:
| Q |
5 |
atcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaaagaagaaagggaagagtt |
104 |
Q |
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||||| |||||| ||||||||| || ||||| |||| ||||| || |||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
34820243 |
atcacaaaaaataatgttggtacgtcataggtgactttggaagctgaggttgaccatcaactcgctgaggcgtctcctttaaagaagaaagggaagagtg |
34820144 |
T |
|
| Q |
105 |
atgaaggcgaggccaacaagaagaa |
129 |
Q |
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|| |||||||| | | ||||||||| |
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| T |
34820143 |
ataaaggcgagacaaccaagaagaa |
34820119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 22080743 - 22080680
Alignment:
| Q |
192 |
ctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatca |
255 |
Q |
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||||||||||||| ||||||||||||||| ||| |||||||| | | | |||||||||||||| |
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| T |
22080743 |
ctggcttcgtgaaagatcatttcaaccttcctgaggattttgaggcagcgaggaagtctaatca |
22080680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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