View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4654-Insertion-1 (Length: 1075)

Name: NF4654-Insertion-1
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4654-Insertion-1
NF4654-Insertion-1
[»] chr4 (8 HSPs)
chr4 (7-665)||(27595589-27596283)
chr4 (655-821)||(27596705-27596873)
chr4 (860-993)||(2547027-2547158)
chr4 (820-889)||(21214886-21214954)
chr4 (862-993)||(35783731-35783859)
chr4 (862-993)||(5444730-5444859)
chr4 (915-1003)||(5440887-5440975)
chr4 (820-893)||(27510582-27510655)
[»] chr6 (6 HSPs)
chr6 (862-995)||(6825506-6825639)
chr6 (862-993)||(6823035-6823166)
chr6 (860-1003)||(8655816-8655958)
chr6 (828-993)||(4555649-4555810)
chr6 (860-993)||(30689634-30689765)
chr6 (853-1003)||(24249723-24249869)
[»] scaffold0001 (2 HSPs)
scaffold0001 (862-993)||(144661-144792)
scaffold0001 (862-995)||(146718-146851)
[»] chr7 (5 HSPs)
chr7 (820-922)||(35130512-35130613)
chr7 (860-994)||(41832613-41832745)
chr7 (860-995)||(41830207-41830340)
chr7 (883-993)||(8083389-8083496)
chr7 (819-893)||(7737276-7737350)
[»] chr3 (14 HSPs)
chr3 (863-993)||(782838-782967)
chr3 (820-920)||(52737899-52737998)
chr3 (820-993)||(10511027-10511196)
chr3 (820-993)||(10514351-10514521)
chr3 (818-898)||(27825786-27825866)
chr3 (863-1003)||(19954440-19954580)
chr3 (911-993)||(10018777-10018857)
chr3 (911-993)||(10123317-10123397)
chr3 (876-993)||(10179974-10180089)
chr3 (911-993)||(10256091-10256171)
chr3 (820-900)||(35240245-35240324)
chr3 (856-940)||(40131939-40132023)
chr3 (867-993)||(10661756-10661880)
chr3 (819-900)||(33785763-33785836)
[»] scaffold0023 (1 HSPs)
scaffold0023 (860-993)||(111544-111675)
[»] chr5 (10 HSPs)
chr5 (860-993)||(21256627-21256758)
chr5 (862-992)||(4730612-4730741)
chr5 (826-898)||(27405399-27405470)
chr5 (860-995)||(21254155-21254288)
chr5 (900-1012)||(26873142-26873252)
chr5 (862-920)||(15424591-15424649)
chr5 (959-995)||(41951729-41951765)
chr5 (860-946)||(31339183-31339270)
chr5 (862-993)||(41949333-41949463)
chr5 (959-993)||(43233929-43233963)
[»] chr2 (8 HSPs)
chr2 (876-994)||(31269462-31269577)
chr2 (883-993)||(31180249-31180355)
chr2 (820-898)||(45391921-45391998)
chr2 (864-993)||(36402684-36402811)
chr2 (860-1003)||(24038270-24038412)
chr2 (820-897)||(27750845-27750921)
chr2 (860-993)||(24039465-24039596)
chr2 (862-912)||(30866090-30866140)
[»] scaffold0525 (1 HSPs)
scaffold0525 (860-993)||(2028-2159)
[»] chr8 (6 HSPs)
chr8 (860-1003)||(7277738-7277880)
chr8 (860-994)||(7275143-7275275)
chr8 (860-1003)||(13856677-13856820)
chr8 (911-986)||(3567495-3567568)
chr8 (820-897)||(29908117-29908193)
chr8 (964-994)||(12464815-12464845)
[»] scaffold0862 (1 HSPs)
scaffold0862 (876-994)||(246-361)
[»] chr1 (5 HSPs)
chr1 (819-898)||(9905883-9905962)
chr1 (820-898)||(9908274-9908352)
chr1 (860-1003)||(18705697-18705839)
chr1 (820-893)||(29850671-29850743)
chr1 (959-993)||(2427335-2427369)
[»] scaffold0959 (1 HSPs)
scaffold0959 (936-993)||(408-463)


Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 7 - 665
Target Start/End: Original strand, 27595589 - 27596283
Alignment:
Q  7 acttccttgttcttttatcaccgtctctaaacgtcttgctagataaaataaaatttggaaacatcctaattatgtatcaattccttgttcttttagtatc 106  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27595589 acttccttgttcttttgtcaccgtctctaaacgtcttgctagataaaataaaatttggaaacatcctaattatgtatcaattccttgttcttttagtatc 27595688  T
Q  107 aataaaatttgttaattnnnnnnnnnnnn--cctaattatgtatgtactatataatacattcactattccttgtctcgaagtttctaacatgggagacca 204  Q
    |||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27595689 aataaaatttgttaattaaaaaaaaaaactacctaattatgtatgtactatataatacattcactattccttgtctcgaagtttctaacatgggagacca 27595788  T
Q  205 aattcacttgtcaccattatcactttgcttgctagggattgagttcattgtttctatagtgttaatcgtagagtatgattcttcggcttaaagttttacg 304  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27595789 aattcacttgtcaccagtatcactttgcttgctagggattgagttcattgtttctatagtgttaatcgtagagtatgattcttcggcttaaatttttacg 27595888  T
Q  305 aacttttgtttacaaattgtgctcgttgaacctttgttttcgtctcaaaaacacacttg-------------------gaggtaagggtgaga-----tc 380  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||     ||    
T  27595889 aacttttgtttataaattgtgctcgttgaacctttgttttcgtctcaaaaacacacttggcggtaaagatcaaatcatgaggtaagggtgagatcaattc 27595988  T
Q  381 aattcaattcaatgggatgatgtgtgtagtgatcaataatgataaatgagaatgtctcatttttctattttgtctaagacaaggtcaactgtcgagccct 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  27595989 aattcaattcaatgggatgatgtgtgtagtgatcaataatgataaatgagaatgtctcatttctctattttgtctaagacaaggtcaattgtcgagccct 27596088  T
Q  481 aagcatgagctaaatgcgttaaatgtgcaattggtaaatcgatcctaaaatgagaaatagaaacactatataataaagtgttgtgtatgtgaatgatgtg 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  27596089 aagcatgagctaaatgcgttaaatgtgcaattggtaaatcgatcctaaaatgagaaatagaaacactatataatatagtgttgtgtatgggaatgatgtg 27596188  T
Q  581 tgtgggcatgc----------attacaatgaattgtgataaatgtacgtactaagtcctaatacaagaaatattaggatctacgatctagatgca 665  Q
    |||| ||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27596189 tgtgtgcatgcattacaatgaattacaatgaattgtgataaatgtacgtactaagtcctaatacaagaaatattaggatctacgatctagatgca 27596283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 655 - 821
Target Start/End: Original strand, 27596705 - 27596873
Alignment:
Q  655 atctagatgcaaagtgtgataagtgttaattctctattgactacgattggattattatcaaggagtgataagggcaaaagagaatgcaagatctatgatt 754  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27596705 atctagatgcaaagtgtgataagtgttaattctctattgactacgattggattattatcaaggagtgataagggcaaaagagaatgcaagatctatgatt 27596804  T
Q  755 tatatgtgataaccc--nnnnnnntggaacaagagaacaaaaaatagcatgatgaaagtatattatcta 821  Q
    |||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  27596805 tatatgtgataacccaaaaaaaaatggaacaagagaacaaaaaatagcatgatgaaagtatattatcta 27596873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 860 - 993
Target Start/End: Original strand, 2547027 - 2547158
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| ||||||||||| |||  ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||     
T  2547027 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattccatttctatcaatacaaagagtttgtt-agatttc- 2547123  T
Q  959 tctccttccttccatggatgccatgtttcctaaca 993  Q
    |||||||||||||||||||| ||||||||||||||    
T  2547124 tctccttccttccatggatgtcatgtttcctaaca 2547158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 820 - 889
Target Start/End: Original strand, 21214886 - 21214954
Alignment:
Q  820 tattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcacccca 889  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||    
T  21214886 tattagagatatagtttagcttcaagta-gtactagtcctatagtagtatatatagttgtaaccacccca 21214954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 862 - 993
Target Start/End: Original strand, 35783731 - 35783859
Alignment:
Q  862 agtagtatatatagttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttcttct 961  Q
    |||||||||||||||||||| |||| ||||||  |||  || || |||||| ||||||||||| ||| |||||||||||||||||||||   ||| | ||    
T  35783731 agtagtatatatagttgtaaccacctcattagaaggtgtctcttatcattt-gtaatattccatttcaatcaatacaaagagtttgtta--gtttttcct 35783827  T
Q  962 ccttccttccatggatgccatgtttcctaaca 993  Q
    ||||| |||||||||||||||||||| |||||    
T  35783828 ccttctttccatggatgccatgtttcttaaca 35783859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 862 - 993
Target Start/End: Original strand, 5444730 - 5444859
Alignment:
Q  862 agtagtatatatagttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttcttct 961  Q
    |||||||||||||||||||| |||| ||||||  |||  || || |||||| ||||||||||| ||| |||||||||||||||||||| || |||   ||    
T  5444730 agtagtatatatagttgtaaccacctcattagaaggtatctcttatcattt-gtaatattccatttcaatcaatacaaagagtttgtt-agtttttccct 5444827  T
Q  962 ccttccttccatggatgccatgtttcctaaca 993  Q
    ||||| |||||| |||||||||||||||||||    
T  5444828 ccttctttccatagatgccatgtttcctaaca 5444859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 915 - 1003
Target Start/End: Original strand, 5440887 - 5440975
Alignment:
Q  915 taatattccacttctatcaatacaaagagtttgttaagatttcttctccttccttccatggatgccatgtttcctaacat-gtatcagag 1003  Q
    ||||||| || ||| |||||||||||||||||||| || ||| ||||||||| ||  || |||||||||||||||||||| |||||||||    
T  5440887 taatatttcatttcaatcaatacaaagagtttgtt-agtttttttctccttctttttatagatgccatgtttcctaacatggtatcagag 5440975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 820 - 893
Target Start/End: Complemental strand, 27510655 - 27510582
Alignment:
Q  820 tattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattag 893  Q
    |||||||||||||| |||| | | ||| |||| ||||| |  |||||| |||||||||||||||||| ||||||    
T  27510655 tattagagatataggttagatactagttagtattagtcatgtagtagtgtatatagttgtaatcacctcattag 27510582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 6e-40; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 862 - 995
Target Start/End: Complemental strand, 6825639 - 6825506
Alignment:
Q  862 agtagtatatatagttgtaatcaccccattagtgggttac--ttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttctt 959  Q
    ||||||||||||| ||||||| |||||||||||||| ||   ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||  |    
T  6825639 agtagtatatatacttgtaataaccccattagtgggataactttttctcattttgtaatattccatttctatcaatacaaagagtttgtt-agattt-at 6825542  T
Q  960 ctccttccttccatggatgccatgtttcctaacatg 995  Q
    ||||||||||||||||||||||||||||||||||||    
T  6825541 ctccttccttccatggatgccatgtttcctaacatg 6825506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 862 - 993
Target Start/End: Complemental strand, 6823166 - 6823035
Alignment:
Q  862 agtagtatatatagttgtaatcaccccattagtgggttac--ttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttctt 959  Q
    ||||||||||||| ||||||| |||| ||||||||| ||   ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||  |    
T  6823166 agtagtatatatacttgtaataaccctattagtgggataactttttctcattttgtaatattccatttctatcaatacaaagagtttgtt-agattt-at 6823069  T
Q  960 ctccttccttccatggatgccatgtttcctaaca 993  Q
    ||||||||||||||| ||| ||||||| ||||||    
T  6823068 ctccttccttccatgaatgtcatgttttctaaca 6823035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 860 - 1003
Target Start/End: Complemental strand, 8655958 - 8655816
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| ||||||||||| |||  ||||||||||||||||||||||||| ||| ||||||| ||||||||| || || ||||     
T  8655958 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattccatttccatcaatagaaagagtttctt-agttttc- 8655862  T
Q  959 tctccttccttccatggatgccatgtttcctaacat-gtatcagag 1003  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||    
T  8655861 tctccttccttctatggatgccatgtttcctaacatggtatcagag 8655816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 828 - 993
Target Start/End: Original strand, 4555649 - 4555810
Alignment:
Q  828 atatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtgggttacttttc--tcattttgtaatattccac 925  Q
    ||||||||||| | |||||| ||||||||||| |  |||||||||||||||||| |||| ||| |||||| ||||||||  |||||  |||||||| ||     
T  4555649 atatagtttagttacaagta-gtactagtcctgg--tagtatatatagttgtaaccacctcataagtgggatacttttcactcatta-gtaatatttcat 4555744  T
Q  926 ttctatcaatacaaagagtttgttaagatttcttctccttccttccatggatgccatgtttcctaaca 993  Q
    |||||||||||||||||||||||| |||||| | |||||||  || ||||||||||||||||||||||    
T  4555745 ttctatcaatacaaagagtttgtt-agattt-tgctccttcgatctatggatgccatgtttcctaaca 4555810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 860 - 993
Target Start/End: Complemental strand, 30689765 - 30689634
Alignment:
Q  860 agagtagtatatatagtt-gtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| ||| || |||| ||||||||||| |||| |||||||||||||||||||||| |||||  ||||||| ||||||||| || || ||||     
T  30689765 agagtagtataaataatttgtaaccaccccattagagggt-acttttctcattttgtaatatttcactttcatcaatagaaagagtttctt-agttttc- 30689669  T
Q  959 tctccttccttccatggatgccatgtttcctaaca 993  Q
    |||| |||||| |||||||||||||||||||||||    
T  30689668 tctcattcctttcatggatgccatgtttcctaaca 30689634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 853 - 1003
Target Start/End: Original strand, 24249723 - 24249869
Alignment:
Q  853 tagtcctagagtagtatatatagttgtaatcaccccattagtgggttacttttc--tcattttgtaatattccacttctatcaatacaaagagtttgtta 950  Q
    |||||||| ||||||||||||||||||||  |||    || |||| ||||||||  |||||| ||||||||||| ||| || |||||||||||||||||     
T  24249723 tagtcctatagtagtatatatagttgtaactacc----taatggggtacttttcactcattt-gtaatattccatttccattaatacaaagagtttgtt- 24249816  T
Q  951 agatttcttctccttccttccatggatgccatgtttcctaacat-gtatcagag 1003  Q
    || |||| |||| ||| || ||| |||||||||||||||||||| |||||||||    
T  24249817 agttttc-tctcattctttacattgatgccatgtttcctaacatggtatcagag 24249869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 75; Significance: 5e-34; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 862 - 993
Target Start/End: Complemental strand, 144792 - 144661
Alignment:
Q  862 agtagtatatatagttgtaatcaccccattagtgggttac--ttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttctt 959  Q
    ||||||||||||| ||||||| |||||||||||||| ||   ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||  |    
T  144792 agtagtatatatacttgtaataaccccattagtgggataactttttctcattttgtaatattccatttctatcaatataaagagtttgtt-agattt-at 144695  T
Q  960 ctccttccttccatggatgccatgtttcctaaca 993  Q
    |||||||||||||| |||||||||||||||||||    
T  144694 ctccttccttccatagatgccatgtttcctaaca 144661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 862 - 995
Target Start/End: Complemental strand, 146851 - 146718
Alignment:
Q  862 agtagtatatatagttgtaatcaccccattagtgggttac--ttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttctt 959  Q
    ||||||||||||| ||||||| ||| |||||||||| ||   ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||  |    
T  146851 agtagtatatatatttgtaataacctcattagtgggataactttttctcattttgtaatattccatttctatcaatataaagagtttgtt-agattt-at 146754  T
Q  960 ctccttccttccatggatgccatgtttcctaacatg 995  Q
    ||||||||||| || |||||||||||||||||||||    
T  146753 ctccttccttctatagatgccatgtttcctaacatg 146718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 5e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 820 - 922
Target Start/End: Original strand, 35130512 - 35130613
Alignment:
Q  820 tattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtgggttacttttctcattttgtaata 919  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||  |||| |||||||||    
T  35130512 tattagagatatagtttaacttcaagtaagtactagtcctagagtagtatatatagttgtaaccaccccattagtgggttaattcactca-tttgtaata 35130610  T
Q  920 ttc 922  Q
    |||    
T  35130611 ttc 35130613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 860 - 994
Target Start/End: Original strand, 41832613 - 41832745
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| ||||||||||| |||| ||||||||||||||||||||||| | ||  ||||||| ||||||||| ||| | |||||    
T  41832613 agagtagtataaataacttgtaaccaccccattagagggt-acttttctcattttgtaatattcaattttcatcaatagaaagagtttctta-gttttct 41832710  T
Q  959 tctccttccttccatggatgccatgtttcctaacat 994  Q
     ||| |||||||||||||||||||||||||||||||    
T  41832711 -ctcattccttccatggatgccatgtttcctaacat 41832745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 860 - 995
Target Start/End: Original strand, 41830207 - 41830340
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| ||||||||||| |||  ||||||||||||||||||||||| | ||  ||||||| ||||||||| ||| | |||||    
T  41830207 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattcaatttacatcaatagaaagagtttctta-gttttct 41830304  T
Q  959 tctccttccttccatggatgccatgtttcctaacatg 995  Q
     ||| ||||||||||||||| ||||||||||||||||    
T  41830305 -ctcattccttccatggatgacatgtttcctaacatg 41830340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 883 - 993
Target Start/End: Complemental strand, 8083496 - 8083389
Alignment:
Q  883 caccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttcttctccttccttccatggatgccat 982  Q
    ||||||||||| |||  |||||| ||||||||||||||| || ||  ||||||| ||||||||| ||| | ||||| |||||||||||||||||||||||    
T  8083496 caccccattagaggga-acttttgtcattttgtaatatttcattttcatcaatagaaagagtttttta-gttttct-ctccttccttccatggatgccat 8083400  T
Q  983 gtttcctaaca 993  Q
    |||||||||||    
T  8083399 gtttcctaaca 8083389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 819 - 893
Target Start/End: Original strand, 7737276 - 7737350
Alignment:
Q  819 ctattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattag 893  Q
    ||||||||||||||| |||| | | ||| |||| ||||| |  ||||||||||||| ||||||||||| ||||||    
T  7737276 ctattagagatataggttagatactagttagtattagtcatgtagtagtatatataattgtaatcacctcattag 7737350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 863 - 993
Target Start/End: Complemental strand, 782967 - 782838
Alignment:
Q  863 gtagtatatatagttgtaatcaccccattagtgggttactttt--ctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttcttc 960  Q
    ||||||||||||||||||| |||||||| ||||||  ||||||  ||||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||    
T  782967 gtagtatatatagttgtaaccaccccataagtgggacactttttactcattt-gtaatattccatttctatcaatacaaagagtttgtt-agatttc-tc 782871  T
Q  961 tccttccttccatggatgccatgtttcctaaca 993  Q
    |||||||||||||||||| ||||||||||||||    
T  782870 tccttccttccatggatgtcatgtttcctaaca 782838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 820 - 920
Target Start/End: Complemental strand, 52737998 - 52737899
Alignment:
Q  820 tattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtgggttacttttctcattttgtaata 919  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||  |  ||||||||||||||    
T  52737998 tattagagatatagtttagcttcaagta-gtattagtcctagagtagtatatatagttgtaaccaccccattagtgggttaactcactcattttgtaata 52737900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 820 - 993
Target Start/End: Complemental strand, 10511196 - 10511027
Alignment:
Q  820 tattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtgggttacttt-tctcattttgtaat 918  Q
    ||||||||||||||||||| | |||||| ||| |||| ||| |||| ||||||||||||||| ||||||||||||||| ||||||  |||| ||||||||    
T  10511196 tattagagatatagtttagttacaagta-gtattagttctatagtaatatatatagttgtaaccaccccattagtgggatactttccctca-tttgtaat 10511099  T
Q  919 attcca-cttctatcaatacaaagagtttgttaagatttcttctccttccttccatggatgccatgtttcctaaca 993  Q
    ||||||  ||| || ||||||||||||||||| || |||| |||| ||| |||||| |||| ||||||||||||||    
T  10511098 attccattttccat-aatacaaagagtttgtt-agttttc-tctcattctttccatagatg-catgtttcctaaca 10511027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 820 - 993
Target Start/End: Complemental strand, 10514521 - 10514351
Alignment:
Q  820 tattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtgggttacttt-tctcattttgtaat 918  Q
    ||||||||||||| ||||| | ||| || ||| |||| ||| |||||||||||||||||||| |||||||||||| || ||||||  |||| | ||||||    
T  10514521 tattagagatataatttagttacaaata-gtattagttctatagtagtatatatagttgtaaccaccccattagtaggatactttcactca-tctgtaat 10514424  T
Q  919 attccacttctatcaatacaaagagtttgttaagatttcttctccttccttccatggatgccatgtttcctaaca 993  Q
    |||||| || |   |||||||||||||| || || |||| |||||||| |||||||||||||||| |||||||||    
T  10514423 attccatttttcataatacaaagagtttatt-agttttc-tctccttctttccatggatgccatgattcctaaca 10514351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 818 - 898
Target Start/End: Complemental strand, 27825866 - 27825786
Alignment:
Q  818 tctattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtgggt 898  Q
    |||||||||||||||||||| |||||||||   | |||||||| |||||||||||||||||||  ||||||||||||||||    
T  27825866 tctattagagatatagtttaacttcaagtagtaaatagtcctatagtagtatatatagttgtagccaccccattagtgggt 27825786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 863 - 1003
Target Start/End: Complemental strand, 19954580 - 19954440
Alignment:
Q  863 gtagtatatatagtt-gtaatcaccccattagtgggttactttt-ctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttcttc 960  Q
    |||||||| |||||| ||||  ||| ||||||||||| |||||  ||||||| ||| ||||||| ||| |||||||||||||| |||||| ||||||| |    
T  19954580 gtagtataaatagtttgtaacaacctcattagtgggtaactttcactcattt-gtattattccatttccatcaatacaaagagattgtta-gatttct-c 19954484  T
Q  961 tccttccttccatggatgccatgtttcctaacat-gtatcagag 1003  Q
    |||||||||||||||||| |||||||| |||||| |||||||||    
T  19954483 tccttccttccatggatgtcatgtttcataacatggtatcagag 19954440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 911 - 993
Target Start/End: Complemental strand, 10018857 - 10018777
Alignment:
Q  911 tttgtaatattccacttctatcaatacaaagagtttgttaagatttcttctccttccttccatggatgccatgtttcctaaca 993  Q
    ||||||||||| || ||| ||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||    
T  10018857 tttgtaatatttcatttccatcaatacaaagagtttgtta-gttttct-ctccttctttccatggatgccatgtttcctaaca 10018777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 911 - 993
Target Start/End: Complemental strand, 10123397 - 10123317
Alignment:
Q  911 tttgtaatattccacttctatcaatacaaagagtttgttaagatttcttctccttccttccatggatgccatgtttcctaaca 993  Q
    ||||||||||| || ||| |||||||||||||||||||| || |||| |||||||| || |||||||||||||||||||||||    
T  10123397 tttgtaatatttcatttccatcaatacaaagagtttgtt-agttttc-tctccttcttttcatggatgccatgtttcctaaca 10123317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 876 - 993
Target Start/End: Complemental strand, 10180089 - 10179974
Alignment:
Q  876 ttgtaatcaccccattagtgggttactttt-ctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttcttctccttccttccatg 974  Q
    ||||||||| || ||||| ||||||||||  ||||||| |||||||| || ||| |||||||||||||||||||| || |||| |||||||| || ||||    
T  10180089 ttgtaatcatcctattagagggttactttcactcattt-gtaatatttcatttccatcaatacaaagagtttgtt-agttttc-tctccttcttttcatg 10179993  T
Q  975 gatgccatgtttcctaaca 993  Q
    |||| ||||||||||||||    
T  10179992 gatgtcatgtttcctaaca 10179974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 911 - 993
Target Start/End: Complemental strand, 10256171 - 10256091
Alignment:
Q  911 tttgtaatattccacttctatcaatacaaagagtttgttaagatttcttctccttccttccatggatgccatgtttcctaaca 993  Q
    ||||||||||| || ||| ||||||||||| ||||||||| | ||||| ||||||| ||||||||||||||||||||||||||    
T  10256171 tttgtaatatttcatttccatcaatacaaaaagtttgtta-gttttct-ctccttctttccatggatgccatgtttcctaaca 10256091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 820 - 900
Target Start/End: Original strand, 35240245 - 35240324
Alignment:
Q  820 tattagagatatagtttagcttcaag-taagtactagtcctagagtagtatatatagttgtaatcaccccattagtgggtta 900  Q
    |||||||||||||||||||  ||| | | |||| |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  35240245 tattagagatatagtttag--tcacggttagtattagttctagagtagtatatatagttgtaaccaccccattagtgggtta 35240324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 856 - 940
Target Start/End: Original strand, 40131939 - 40132023
Alignment:
Q  856 tcctagagtagtatatatagttgtaatcaccccattagtgggttacttt-tctcattttgtaatattccacttctatcaatacaaa 940  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||||||  |||| |||||||||||| | || ||||||||||||    
T  40131939 tcctatagtagtatatatagttgtaatcaccctattagtgggatactttcactca-tttgtaatattcaatttttatcaatacaaa 40132023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 867 - 993
Target Start/End: Complemental strand, 10661880 - 10661756
Alignment:
Q  867 tatatatagttgtaatcaccccattagtgggttacttt-tctcattttgtaatattcca-cttctatcaatacaaagagtttgttaagatttcttctcct 964  Q
    ||||||||||||||| ||||||||||||||| ||||||  |||| ||||||||||||||  ||| || | ||||||||||||||| || |||| |||| |    
T  10661880 tatatatagttgtaaccaccccattagtgggatactttcactca-tttgtaatattccattttccat-actacaaagagtttgtt-agttttc-tctcat 10661785  T
Q  965 tccttccatggatgccatgtttcctaaca 993  Q
    || ||||||||||| ||||||||||||||    
T  10661784 tctttccatggatgtcatgtttcctaaca 10661756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 819 - 900
Target Start/End: Original strand, 33785763 - 33785836
Alignment:
Q  819 ctattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtgggtta 900  Q
    |||||||||||||||||||||||||||| |||||||||     |||||  |||||| |||||| ||||||||||||||||||    
T  33785763 ctattagagatatagtttagcttcaagt-agtactagt-----agtag--tatataattgtaaccaccccattagtgggtta 33785836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 63; Significance: 8e-27; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 860 - 993
Target Start/End: Complemental strand, 111675 - 111544
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| ||||||||||| |||  ||||||||||||||||||||||||| ||  ||||||| ||||||||| |||| ||||||    
T  111675 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattccatttaaatcaataaaaagagtttattaa-atttct 111578  T
Q  959 tctccttccttccatggatgccatgtttcctaaca 993  Q
     ||||||||||||||||||||||||||||||||||    
T  111577 -ctccttccttccatggatgccatgtttcctaaca 111544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 8e-27; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 860 - 993
Target Start/End: Original strand, 21256627 - 21256758
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| ||||||||||| |||  ||||||||||||||||||||||||| ||  ||||||| |||||||||||| || ||||     
T  21256627 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattccattttcatcaatagaaagagtttgtt-agttttc- 21256723  T
Q  959 tctccttccttccatggatgccatgtttcctaaca 993  Q
    |||||||||||||||||||||||||||||||||||    
T  21256724 tctccttccttccatggatgccatgtttcctaaca 21256758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 862 - 992
Target Start/End: Original strand, 4730612 - 4730741
Alignment:
Q  862 agtagtatatatagttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttcttct 961  Q
    ||||||||||||| ||||||| | ||||||| |||| ||  ||  |||||||||||||||||| ||| |||||||||||||||||||||   ||| ||||    
T  4730612 agtagtatatatacttgtaataatcccattaatgggataacttcatcattttgtaatattccatttccatcaatacaaagagtttgttagctttttttct 4730711  T
Q  962 ccttccttccatggatgccatgtttcctaac 992  Q
    |||| | ||||||||||||||||||||||||    
T  4730712 cctt-catccatggatgccatgtttcctaac 4730741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 826 - 898
Target Start/End: Complemental strand, 27405470 - 27405399
Alignment:
Q  826 agatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtgggt 898  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  27405470 agatatagtttagcttcaagta-gtactagtcctagagtagtatatatagttgtaatcacctcattaatgggt 27405399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 860 - 995
Target Start/End: Original strand, 21254155 - 21254288
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| | ||||||||| |||  ||||||||||||||||||||||||  ||  ||||||| |||||||||||||   |||      
T  21254155 agagtagtataaataacttgtaaccgccccattagaggga-acttttctcattttgtaatattcctttttcatcaatagaaagagtttgttac--ttttc 21254251  T
Q  959 tctccttccttccatggatgccatgtttcctaacatg 995  Q
    |||||||||||||||||||||||||||||||||||||    
T  21254252 tctccttccttccatggatgccatgtttcctaacatg 21254288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 900 - 1012
Target Start/End: Complemental strand, 26873252 - 26873142
Alignment:
Q  900 acttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttcttctccttccttccatggatgccatgtttcctaacat-gtat 998  Q
    ||||||||||||| ||||||||| | ||| ||||||| ||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  26873252 acttttctcatttcgtaatattctatttccatcaatagaaagagtttctta-gttttct-ctccttccttccatggatgccatgtttcctaacatggtat 26873155  T
Q  999 cagaggcgaatctg 1012  Q
    |||| |||||||||    
T  26873154 caga-gcgaatctg 26873142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 920
Target Start/End: Complemental strand, 15424649 - 15424591
Alignment:
Q  862 agtagtatatatagttgtaatcaccccattagtgggttacttttctcattttgtaatat 920  Q
    ||||||||||||||||||||  |||||||||||||| ||  || |||||||||||||||    
T  15424649 agtagtatatatagttgtaacaaccccattagtgggataacttcctcattttgtaatat 15424591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 959 - 995
Target Start/End: Complemental strand, 41951765 - 41951729
Alignment:
Q  959 tctccttccttccatggatgccatgtttcctaacatg 995  Q
    |||| ||||||||||||||||||||||||||||||||    
T  41951765 tctcattccttccatggatgccatgtttcctaacatg 41951729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 860 - 946
Target Start/End: Complemental strand, 31339270 - 31339183
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagttt 946  Q
    ||||||||||| |||  |||||| |||||||||||||||| | ||  ||||||||||||||||| | ||| ||| ||| |||||||||    
T  31339270 agagtagtataaataacttgtaaccaccccattagtgggtcaattcactcattttgtaatattcaatttccatcgatagaaagagttt 31339183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 993
Target Start/End: Complemental strand, 41949463 - 41949333
Alignment:
Q  862 agtagtatatatagttgtaatcaccccattagtgggttacttttctcattttgtaatattccactt--ctatcaatacaaagagtttgttaagatttctt 959  Q
    ||||||||||||||||||||  |||||||||||||| ||  || ||||||| |||||||| || ||  ||||||||||||  | ||  |  || | |  |    
T  41949463 agtagtatatatagttgtaacaaccccattagtgggataacttcctcattt-gtaatattacattttactatcaatacaacaatttcat--agctattct 41949367  T
Q  960 ctccttccttccatggatgccatgtttcctaaca 993  Q
    ||| ||||||||||||||||||||||||||||||    
T  41949366 ctcattccttccatggatgccatgtttcctaaca 41949333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 959 - 993
Target Start/End: Original strand, 43233929 - 43233963
Alignment:
Q  959 tctccttccttccatggatgccatgtttcctaaca 993  Q
    |||| ||||||||||||||||||||||||||||||    
T  43233929 tctcattccttccatggatgccatgtttcctaaca 43233963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 8e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 876 - 994
Target Start/End: Complemental strand, 31269577 - 31269462
Alignment:
Q  876 ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttcttctccttccttccatgg 975  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||||| | ||| ||||||| ||||||||| ||| | ||||| ||||||||||||||||    
T  31269577 ttgtaaccaccccattagagggt-acttttctcattttgtaatattcaatttccatcaatagaaagagtttctta-gttttct-ctccttccttccatgg 31269481  T
Q  976 atgccatgtttcctaacat 994  Q
    |||||||||||||||||||    
T  31269480 atgccatgtttcctaacat 31269462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 883 - 993
Target Start/End: Original strand, 31180249 - 31180355
Alignment:
Q  883 caccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttcttctccttccttccatggatgccat 982  Q
    ||||||||||| |||  ||||||||||||||||||||||||| ||| ||||||| ||||||||| || || |||| ||||||||||||||||||||||||    
T  31180249 caccccattagaggg--acttttctcattttgtaatattccatttccatcaatagaaagagtttctt-agttttc-tctccttccttccatggatgccat 31180344  T
Q  983 gtttcctaaca 993  Q
    | |||||||||    
T  31180345 gcttcctaaca 31180355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 820 - 898
Target Start/End: Complemental strand, 45391998 - 45391921
Alignment:
Q  820 tattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtgggt 898  Q
    |||||||||||||||||||   ||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  45391998 tattagagatatagtttagtcacaatta-gtattagtcctagagtagtatatatagttgtaaccaccccattagtgggt 45391921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 864 - 993
Target Start/End: Complemental strand, 36402811 - 36402684
Alignment:
Q  864 tagtatatatagtt-gtaatcaccccattagtgggttactttt-ctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttcttct 961  Q
    ||||||| |||||| |||| |||||||||||||||| |||||  ||||||| ||||||||| | ||| |||||||||||||||||||  ||||||| |||    
T  36402811 tagtataaatagtttgtaaccaccccattagtgggtaactttcactcattt-gtaatattctatttccatcaatacaaagagtttgt--agatttc-tct 36402716  T
Q  962 ccttccttccatggatgccatgtttcctaaca 993  Q
    ||||| ||||||||||  |||||||| |||||    
T  36402715 ccttcattccatggatatcatgtttcataaca 36402684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 860 - 1003
Target Start/End: Original strand, 24038270 - 24038412
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| ||| ||||||| |||  ||||||||||| ||||||||||||| ||  ||||||| ||| ||||| ||| | |||||    
T  24038270 agagtagtataaataacttgtaaccactccattagagggc-acttttctcatattgtaatattccattttcatcaatagaaaaagtttctta-gttttct 24038367  T
Q  959 tctccttccttccatggatgccatgtttcctaacat-gtatcagag 1003  Q
     ||| ||||||||||||||||||||||| ||||||| |||||||||    
T  24038368 -ctcattccttccatggatgccatgttttctaacatggtatcagag 24038412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 820 - 897
Target Start/End: Complemental strand, 27750921 - 27750845
Alignment:
Q  820 tattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtggg 897  Q
    ||||||||||||||||||  | |||||| ||| |||||||| |||||||||||||||||||| |||| ||||||||||    
T  27750921 tattagagatatagtttacttacaagta-gtattagtcctatagtagtatatatagttgtaaccacctcattagtggg 27750845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 860 - 993
Target Start/End: Original strand, 24039465 - 24039596
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| |||| |||||| |||  ||||||||||| ||||||||||||| ||  ||||||| ||| ||||| ||| | |||||    
T  24039465 agagtagtataaataacttgtaaccacctcattagagggc-acttttctcatattgtaatattccattttcatcaatagaaaaagtttctta-gttttct 24039562  T
Q  959 tctccttccttccatggatgccatgtttcctaaca 993  Q
     ||| ||||||||||||||||||||||| ||||||    
T  24039563 -ctcattccttccatggatgccatgttttctaaca 24039596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 912
Target Start/End: Original strand, 30866090 - 30866140
Alignment:
Q  862 agtagtatatatagttgtaatcaccccattagtgggttacttttctcattt 912  Q
    ||||||||||||| ||||||| |||||||||||||  || |||||||||||    
T  30866090 agtagtatatatacttgtaataaccccattagtggaataattttctcattt 30866140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 860 - 993
Target Start/End: Complemental strand, 2159 - 2028
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| ||||||||||| |||  ||||||||||||||||||||||||| ||| ||||||| ||||||||| || || ||||     
T  2159 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattccatttccatcaatagaaagagtttctt-agttttc- 2063  T
Q  959 tctccttccttccatggatgccatgtttcctaaca 993  Q
    |||||||||||||||||||||||||||||| ||||    
T  2062 tctccttccttccatggatgccatgtttcccaaca 2028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 8e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 860 - 1003
Target Start/End: Complemental strand, 7277880 - 7277738
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| ||||||||||| |||| ||||||||||||||||||||||||| ||  ||||||| ||||||||| || || ||||     
T  7277880 agagtagtataaataacttgtaaccaccccattagagggt-acttttctcattttgtaatattccattttcatcaatagaaagagtttctt-agttttc- 7277784  T
Q  959 tctccttccttccatggatgccatgtttcctaacat-gtatcagag 1003  Q
    |||||||| |||||||||| |||||||||||||||| |||||||||    
T  7277783 tctccttctttccatggataccatgtttcctaacatggtatcagag 7277738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 860 - 994
Target Start/End: Complemental strand, 7275275 - 7275143
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| ||||||||||| |||| ||||||||||||||||||||||||| ||  ||||||| ||||||||| || || ||||     
T  7275275 agagtagtataaataacttgtaaccaccccattagagggt-acttttctcattttgtaatattccattttcatcaatagaaagagtttctt-agttttc- 7275179  T
Q  959 tctccttccttccatggatgccatgtttcctaacat 994  Q
    |||||||| || ||||||| ||||||||||||||||    
T  7275178 tctccttcttttcatggataccatgtttcctaacat 7275143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 860 - 1003
Target Start/End: Original strand, 13856677 - 13856820
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttactttt-ctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttc 957  Q
    ||||||||||| |||  |||||| ||||||||||| ||||||||||  ||||||| ||| ||||||| |||||||||||||||| ||| |||| | ||||    
T  13856677 agagtagtataaataacttgtaaccaccccattagagggttactttcactcattt-gtagtattccatttctatcaatacaaagtgttcgtta-gttttc 13856774  T
Q  958 ttctccttccttccatggatgccatgtttcctaacat-gtatcagag 1003  Q
    | ||||||| ||||||||||| |||||||| |||||| |||||||||    
T  13856775 t-ctccttctttccatggatgtcatgtttcataacatggtatcagag 13856820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 911 - 986
Target Start/End: Complemental strand, 3567568 - 3567495
Alignment:
Q  911 tttgtaatattccacttctatcaatacaaagagtttgttaagatttcttctccttccttccatggatgccatgttt 986  Q
    |||||||||||||| ||  |||||||||||||||||||| ||||||||| |||||||||||| ||||| |||||||    
T  3567568 tttgtaatattccattttcatcaatacaaagagtttgtt-agatttctt-tccttccttccacggatgtcatgttt 3567495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 820 - 897
Target Start/End: Complemental strand, 29908193 - 29908117
Alignment:
Q  820 tattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtggg 897  Q
    |||||||||||||| |||| | |||||| ||| |||||||| |||||| ||||||||||||| |||  ||||||||||    
T  29908193 tattagagatataggttagttacaagta-gtattagtcctatagtagtgtatatagttgtaaccacttcattagtggg 29908117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 964 - 994
Target Start/End: Original strand, 12464815 - 12464845
Alignment:
Q  964 ttccttccatggatgccatgtttcctaacat 994  Q
    |||||||||||||||||||||||||||||||    
T  12464815 ttccttccatggatgccatgtttcctaacat 12464845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 55; Significance: 5e-22; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 876 - 994
Target Start/End: Original strand, 246 - 361
Alignment:
Q  876 ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttcttctccttccttccatgg 975  Q
    |||||| ||||||||||| |||  ||||||||||||||||||||||||| ||  ||||||| ||||||||| ||| | ||||| |||||||||| |||||    
T  246 ttgtaaccaccccattagaggga-acttttctcattttgtaatattccattttcatcaatagaaagagtttctta-gttttct-ctccttcctttcatgg 342  T
Q  976 atgccatgtttcctaacat 994  Q
    |||||||||||||||||||    
T  343 atgccatgtttcctaacat 361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 819 - 898
Target Start/End: Complemental strand, 9905962 - 9905883
Alignment:
Q  819 ctattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtgggt 898  Q
    |||||||||||||||||||||||||||||   | |||||||| |||||||||||||||||||  ||||||||||||||||    
T  9905962 ctattagagatatagtttagcttcaagtagtaaatagtcctatagtagtatatatagttgtagccaccccattagtgggt 9905883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 820 - 898
Target Start/End: Complemental strand, 9908352 - 9908274
Alignment:
Q  820 tattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattagtgggt 898  Q
    ||||||||||||||||||||||||||||   | |||||||| |||||||||||||||||||  ||||||||||||||||    
T  9908352 tattagagatatagtttagcttcaagtagtaaatagtcctatagtagtatatatagttgtagccaccccattagtgggt 9908274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 860 - 1003
Target Start/End: Complemental strand, 18705839 - 18705697
Alignment:
Q  860 agagtagtatatatag-ttgtaatcaccccattagtgggttacttttctcattttgtaatattccacttctatcaatacaaagagtttgttaagatttct 958  Q
    ||||||||||| |||  |||||| ||||||||||| |||  ||||||||||||||||||||||| | ||  ||||||| ||||||||| ||| | |||||    
T  18705839 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattctattttcatcaatagaaagagtttctta-gttttct 18705742  T
Q  959 tctccttccttccatggatgccatgtttcctaacat-gtatcagag 1003  Q
     |||||||||| |||||||||||||||| ||||||| |||||||||    
T  18705741 -ctccttcctttcatggatgccatgttttctaacatggtatcagag 18705697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 820 - 893
Target Start/End: Complemental strand, 29850743 - 29850671
Alignment:
Q  820 tattagagatatagtttagcttcaagtaagtactagtcctagagtagtatatatagttgtaatcaccccattag 893  Q
    ||||||||||||||||||| | |||||| ||| || |  || |||||||||||||||||||| |||||||||||    
T  29850743 tattagagatatagtttagttacaagta-gtattaattttatagtagtatatatagttgtaaccaccccattag 29850671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 959 - 993
Target Start/End: Original strand, 2427335 - 2427369
Alignment:
Q  959 tctccttccttccatggatgccatgtttcctaaca 993  Q
    |||| ||||||||||||||||||||||||||||||    
T  2427335 tctcattccttccatggatgccatgtttcctaaca 2427369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 936 - 993
Target Start/End: Complemental strand, 463 - 408
Alignment:
Q  936 acaaagagtttgttaagatttcttctccttccttccatggatgccatgtttcctaaca 993  Q
    |||| |||||||||| ||||||| ||| ||||||||||||||||| ||||||||||||    
T  463 acaacgagtttgtta-gatttct-ctcattccttccatggatgccttgtttcctaaca 408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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