View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4654-Insertion-10 (Length: 623)
Name: NF4654-Insertion-10
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 6 - 405
Target Start/End: Complemental strand, 33206857 - 33206460
Alignment:
| Q |
6 |
cactaagggcatgccaagtgatgaaagtttgcataaaaaa-gctagaagacactttacaagtctataaaccaagtcctccaagtccatcaacatcaagca |
104 |
Q |
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| T |
33206857 |
cactaagggcatgccaagtgatgaaagtttgcataaaaaaagctagaagacactttacaagtctacaaaccaagtcctccaagtccatcaacatcaagca |
33206758 |
T |
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| Q |
105 |
atcttaaattacaaaatatattacccgaaagcaataataaaaacaagcatactacatcacctacggctacatatatacacctatccaacattactcannn |
204 |
Q |
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| T |
33206757 |
atcttaaattacaaaatatatcacccgaaagcaataataaaaacaagcatactacatcacctacagctacatatatacacctattca---ttactcattt |
33206661 |
T |
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| Q |
205 |
nnnnaaattgatttagatgtttatcaaggattttatatatgtattgaattattatgagtaacgcataaaatcaaagttggagactatatctgtcttaaga |
304 |
Q |
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| T |
33206660 |
ttttaaattgatttagatgtttaccaaggattttatatatgtattgaattattatgagtaacgcataaaatcaaagttggagactatatctgtcttaaga |
33206561 |
T |
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| Q |
305 |
aaatatataactttcatttgttttttggacaaattataacattcattcttttaaattgattacaactatcttgattcttttaaattgatttctctaaatg |
404 |
Q |
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| T |
33206560 |
aaatatataacattcatttgttttttggacaaattataacattcattcttttaaattgattacaactatcttgattcttttaaattgatttctctaaatg |
33206461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 425 - 542
Target Start/End: Complemental strand, 33206466 - 33206349
Alignment:
| Q |
425 |
taaatgaccacctcatcaattgatccgaattgaccaagaaggttggccgtactggagcaatgttctgttgaggttgaaagtagagggtggcaccttgtcg |
524 |
Q |
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| T |
33206466 |
taaatgaccacctcatcaattgatccgaattgacaaagaaggttggccgtaccggagcaatgttccgttgaggttgaaagtagagggtggcaccttgttg |
33206367 |
T |
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| Q |
525 |
ataaccttgtgtactttc |
542 |
Q |
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|||||||||||||||||| |
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| T |
33206366 |
ataaccttgtgtactttc |
33206349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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