View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4654-Insertion-11 (Length: 596)
Name: NF4654-Insertion-11
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654-Insertion-11 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 10 - 493
Target Start/End: Original strand, 39236763 - 39237245
Alignment:
| Q |
10 |
ttgttgttttctttgatgtgtccatgaattttgttgttgttgacataagcaagaaaatgaatagtatatttgaactttgattttaatataaagaataaag |
109 |
Q |
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| T |
39236763 |
ttgttgttttctttgatgtgtccatgaattttgttgttgttgacataagcaagaaaatgaatagtatatttgaactttgattttaatataaagaataaag |
39236862 |
T |
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| Q |
110 |
aaagggaacggggagcatatactatataagcacgtttgaaaattcatttaggaatcactaaacttagatatctttgtnnnnnnntggcaaacttaaacaa |
209 |
Q |
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| T |
39236863 |
aaagggaacggggagcatatactatataagcacgtctgaaaattcattt-ggaatcactaaacttagatatctttgtaagaaaatggcaaacttaaacaa |
39236961 |
T |
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| Q |
210 |
agtagtatgcataatatttatgttggtgttattatttaccaagttggaaagtcgttcagttgatgcattcatggagagtaataagaagatcccagccaag |
309 |
Q |
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| T |
39236962 |
agtagtatgcataatatttatgttggtgttattatttaccaagttggaaagtcgttcacttgatgcattcatggagagtaataagaagatcccagccaag |
39237061 |
T |
|
| Q |
310 |
tcttgttgccaacaacttattcaaaaatcacagtacttgaaagcaagttttgcaaaatcagagcaaaaatttagaaatatctatgactccaaacgactta |
409 |
Q |
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| T |
39237062 |
tcttgttgccaacaacttattcaaaaatcatagtacttgaaagcaagttttgcaaaatcagagcaaaaatttagaaatatctatgactccaaacgactta |
39237161 |
T |
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| Q |
410 |
gtcctcaagggcctgaccctagacaccactgatttctcttattaactatgttttcacactaatccattagtacaatgttatata |
493 |
Q |
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| T |
39237162 |
gtcctcaagggcctgaccctagacaccactgatttctcttattaactatgttttcacactaatccattagtacaatgttatata |
39237245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 495 - 596
Target Start/End: Original strand, 39238933 - 39239037
Alignment:
| Q |
495 |
ctagacaacttcatagagaaaatatagctgctgccttgggcgcctcacg---cttctgacatgatcaaaccaaaattatgattttaaagctcacacaaca |
591 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39238933 |
ctagacaacttcatggagaaaatatagctgctgccttgggcgcctcacgcttcttctgacatgatcaaaccaaacttatgattttaaagctcacacaaca |
39239032 |
T |
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| Q |
592 |
caaat |
596 |
Q |
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| T |
39239033 |
caaat |
39239037 |
T |
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