View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4654-Insertion-12 (Length: 554)
Name: NF4654-Insertion-12
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654-Insertion-12 |
 | |
|
| [»] chr5 (12 HSPs) |
| |
|
| [»] scaffold0627 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 8 - 554
Target Start/End: Original strand, 9003081 - 9003627
Alignment:
| Q |
8 |
caaacatgacaaccttaggtgatgagatctataggtaacaacaagccttcctttctccaaatagaatggaaaaaaggaagttaaaataggtaacatcaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9003081 |
caaacatgacaaccttaggtgatgagatctataggtaacaacaaaccttcctttctccaaatagaatggaaaaaaggaagttaaaataggtaacatcaag |
9003180 |
T |
|
| Q |
108 |
ttcatgagtttttaaaaggaagttaaaatacgtgtcttacaattaaaattaattacgatttcaaaaggagcatcaaattcaattacctaatgaaaatcaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
9003181 |
ttcatgagtttttaaaaggaagttaaaatacgtgtcttacgattaaaattaattacgatttcaaaaggagcatcaaatttaattacttaatgaaaatcaa |
9003280 |
T |
|
| Q |
208 |
atattagaagctacatccttacctccttgagtaggcattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9003281 |
atattagaagctacatccttacctccttgagtagacattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgt |
9003380 |
T |
|
| Q |
308 |
ggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcgggttcatagtagactaaacaattgtacgattcat |
407 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9003381 |
ggaattacttcaactaattttgattgagccccgtgaacttgaaaaactctgaatccatgtttctcgggttcatagtagactaaacaattgtacgattcat |
9003480 |
T |
|
| Q |
408 |
aaaacaatatgcaagcactctcttcaaacagttttaccggccaacaaaaaccactagacggatattcaggtatgcccaaaggaccggcggaagtatcaat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9003481 |
aaaacaatatgcaagcactctcttcaaacagttttaccggccaacaaaaaccactagacggatattcaggtatgcccaaaggaccggcggaagtatcaat |
9003580 |
T |
|
| Q |
508 |
gctgtaaaccttagtccaagaccatactccttcataacccaagttgc |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9003581 |
gctgtaaaccttagtccaagaccatactccttcataacccaagttgc |
9003627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 244 - 460
Target Start/End: Original strand, 8677652 - 8677868
Alignment:
| Q |
244 |
attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtga |
343 |
Q |
| |
|
||||| |||||||| ||||||||| || ||| | ||||||||||||||||||||||||| ||||||||||| |||| | |||| || || | |||| |
|
|
| T |
8677652 |
attcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtga |
8677751 |
T |
|
| Q |
344 |
actcgaaaaactttgaatccatgtttctcgggttcatagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagtttta |
443 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||||||| | ||||||| | || | ||| ||||||||| ||||| ||||||||| |||||| |
|
|
| T |
8677752 |
attcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccctcttcaaagtgtttta |
8677851 |
T |
|
| Q |
444 |
ccggccaacaaaaacca |
460 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
8677852 |
ccggccaacataaacca |
8677868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 174 - 525
Target Start/End: Original strand, 8643992 - 8644340
Alignment:
| Q |
174 |
ggagcatcaaattcaattacctaatgaaaatcaaatattagaagctacatccttacctccttgagtaggcattcaacacctcaacattgtctccatttac |
273 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||| |||| |||||||| ||||||| ||||| | ||||| || |||| ||||||||| || || |
|
|
| T |
8643992 |
ggagcatcaaattcaatttgtcaatcaaaataaaatcttagcagctacattcttacct---tgagtggatattcagcatctcagtattgtctcctttcac |
8644088 |
T |
|
| Q |
274 |
agcctccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcg |
373 |
Q |
| |
|
| | ||||||||||||||||||||||||| ||||||||||| |||| | |||| || | | ||||| ||||||||||||||| ||||||||| | |
|
|
| T |
8644089 |
aacatccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttg |
8644188 |
T |
|
| Q |
374 |
ggttcatagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggccaacaaaaaccactagacggatatt |
473 |
Q |
| |
|
||||||||||||| | ||||||| | || | ||| ||||||||| ||| | ||||||||| ||||||||||||||| |||||| | | | | | |
|
|
| T |
8644189 |
ggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagttttttaccggccaacataaaccataacgctgcgaat |
8644288 |
T |
|
| Q |
474 |
caggtatgcccaaaggaccggcggaagtatcaatgctgtaaaccttagtcca |
525 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
8644289 |
caggtctgcccaaaggactgatcaaagtatcaatgttgtaaaccttagtcca |
8644340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 199 - 450
Target Start/End: Complemental strand, 9075021 - 9074773
Alignment:
| Q |
199 |
gaaaatcaaatattagaagctacatccttacctccttgagtaggcattcaacacctcaacattgtctccatttacagcctccttcaatgagattagactt |
298 |
Q |
| |
|
|||||| || ||||||||||||||| ||||||| ||||| | ||||| |||||| | ||||||||| || | | ||||||||||| ||||||||| |
|
|
| T |
9075021 |
gaaaataaagtattagaagctacattcttacct---tgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagactt |
9074925 |
T |
|
| Q |
299 |
ggaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcgggttcatagtagactaaacaattgt |
398 |
Q |
| |
|
||||||||||| ||||||||| || ||||| ||| || |||| |||||||||||||||||||| |||||| ||||||||| ||| |||||||||| |
|
|
| T |
9074924 |
ggaatatgtgggattacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgt |
9074825 |
T |
|
| Q |
399 |
acgattcataaaacaatatgcaagcactctcttcaaacagttttaccggcca |
450 |
Q |
| |
|
| | | ||| ||||||||| ||||| |||||||| |||||| |||||| |
|
|
| T |
9074824 |
agcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggcca |
9074773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 525
Target Start/End: Original strand, 8636714 - 8636995
Alignment:
| Q |
244 |
attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtga |
343 |
Q |
| |
|
||||| |||||| | ||||||||| || || | ||||||||||||||||||||||||| ||||||||||| |||| | || | || || | ||| |
|
|
| T |
8636714 |
attcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaattatttcaacaaactcggaagaagtgccttga |
8636813 |
T |
|
| Q |
344 |
actcgaaaaactttgaatccatgtttctcgggttcatagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagtttta |
443 |
Q |
| |
|
| || |||||||||||| ||| ||||||||||||||||||||| | ||||||| | || | ||| ||||||||| ||| | ||||||||| |||||| |
|
|
| T |
8636814 |
attctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtttta |
8636913 |
T |
|
| Q |
444 |
ccggccaacaaaaaccactagacggatattcaggtatgcccaaaggaccggcggaagtatcaatgctgtaaaccttagtcca |
525 |
Q |
| |
|
||||||| || | |||| | | | | |||||| |||||||||||| | | ||||||| ||| |||||||||||||||| |
|
|
| T |
8636914 |
ccggccatcatataccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcgatgttgtaaaccttagtcca |
8636995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 200 - 435
Target Start/End: Original strand, 8535307 - 8535539
Alignment:
| Q |
200 |
aaaatcaaatattagaagctacatccttacctccttgagtaggcattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttg |
299 |
Q |
| |
|
||||| |||| ||||||||||||| ||||||| ||||| | ||||| ||||||| |||||| || || | | | ||||||||||| |||||||||| |
|
|
| T |
8535307 |
aaaataaaatcttagaagctacattcttacct---tgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttg |
8535403 |
T |
|
| Q |
300 |
gaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcgggttcatagtagactaaacaattgta |
399 |
Q |
| |
|
|||| ||||| ||||||||| || ||||| | || || || ||||||||||| |||||||| |||||| ||||||||||||| ||||||||| | |
|
|
| T |
8535404 |
gaatgtgtgggattacttcaaaaaaatttgaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgca |
8535503 |
T |
|
| Q |
400 |
cgattcataaaacaatatgcaagcactctcttcaaa |
435 |
Q |
| |
|
|| | ||| ||||||||| ||||| |||||||| |
|
|
| T |
8535504 |
ggaatgatataacaatatggcagcaccttcttcaaa |
8535539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 8641255 - 8641296
Alignment:
| Q |
278 |
tccttcaatgagattagacttggaatatgtggaattacttca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8641255 |
tccttcaatgagattagacttggaatatgtggaattacttca |
8641296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 8548350 - 8548275
Alignment:
| Q |
244 |
attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttca |
319 |
Q |
| |
|
||||| |||||||| ||||||||| || | | |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8548350 |
attcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttca |
8548275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 2905195 - 2905128
Alignment:
| Q |
252 |
cctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttca |
319 |
Q |
| |
|
||||||||||||||||||| || | || |||||||| |||||||||||||||||| |||| |||||| |
|
|
| T |
2905195 |
cctcaacattgtctccattcacgacatctttcaatgatattagacttggaatatgttgaataacttca |
2905128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 8548587 - 8548509
Alignment:
| Q |
18 |
aaccttaggtgatgagatctataggtaacaacaagccttcctttctccaaatagaatg-gaaaaaaggaagttaaaata |
95 |
Q |
| |
|
||||||| |||| |||||| || ||||||||||||||||||| ||||||||||||| |||| |||||||| ||||| |
|
|
| T |
8548587 |
aaccttaagtgagaagatctgtacttaacaacaagccttcctttatccaaatagaatgccaaaataggaagtttaaata |
8548509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 1600580 - 1600464
Alignment:
| Q |
200 |
aaaatcaaatattagaagctacatccttacctccttgagtaggcattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttg |
299 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||| ||||| | ||||| |||||||| |||||| || || | | ||||||||||| |||||||||| |
|
|
| T |
1600580 |
aaaataaaatatttgaagctacattcttacct---tgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttg |
1600484 |
T |
|
| Q |
300 |
gaatatgtggaattacttca |
319 |
Q |
| |
|
||||||| || |||| |||| |
|
|
| T |
1600483 |
gaatatgcgggattatttca |
1600464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 8528827 - 8528868
Alignment:
| Q |
278 |
tccttcaatgagattagacttggaatatgtggaattacttca |
319 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
8528827 |
tccttcaatgaaattagacttggaatgtgtgggattacttca |
8528868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 248 - 418
Target Start/End: Original strand, 35779688 - 35779858
Alignment:
| Q |
248 |
aacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtgaactc |
347 |
Q |
| |
|
||||| |||| ||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||| | ||||||| ||| || ||| || |
|
|
| T |
35779688 |
aacacttcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattc |
35779787 |
T |
|
| Q |
348 |
gaaaaactttgaatccatgtttctcgggttcatagtagactaaacaattgtacgattcataaaacaatatg |
418 |
Q |
| |
|
||||||||||| |||||| |||||| |||||| |||||| ||||||||| | || | ||| ||||||||| |
|
|
| T |
35779788 |
gaaaaactttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatg |
35779858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 4507 - 4582
Alignment:
| Q |
244 |
attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttca |
319 |
Q |
| |
|
|||||||||||||| ||||||||| || || || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4507 |
attcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttca |
4582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 16716194 - 16716267
Alignment:
| Q |
244 |
attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattactt |
317 |
Q |
| |
|
|||||||||||||| ||| ||||| || || || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16716194 |
attcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactt |
16716267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 451
Target Start/End: Original strand, 5130653 - 5130861
Alignment:
| Q |
244 |
attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtga |
343 |
Q |
| |
|
||||| |||||||| ||||||||| || ||| ||||| | ||| |||||||||| ||||||||||||||||||| |||||| || || ||| |
|
|
| T |
5130653 |
attcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatcttttttgaacaagtcccatga |
5130752 |
T |
|
| Q |
344 |
actcgaaaaactttgaatccatgtttctcgggttcatagt-agactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagtttt |
442 |
Q |
| |
|
| ||||||||||||| ||| || |||||| ||||||| || |||| ||||| ||| | || | ||| | ||||||| ||||| ||||||||| ||||| |
|
|
| T |
5130753 |
attcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtttt |
5130852 |
T |
|
| Q |
443 |
accggccaa |
451 |
Q |
| |
|
||||||||| |
|
|
| T |
5130853 |
accggccaa |
5130861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University