View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4654-Insertion-13 (Length: 506)
Name: NF4654-Insertion-13
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654-Insertion-13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 8 - 506
Target Start/End: Complemental strand, 15186605 - 15186096
Alignment:
| Q |
8 |
ctttttacatctaaattttagaatccaaaattgaattgtagatgcatatttagtgtatcacgcatgagcttgtattgcaaatttctttgaaaaattattc |
107 |
Q |
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| T |
15186605 |
ctttttacatctaaattttagaatccaaaattgaattgtagatgcatatttagtgtatcacgcatgagcttgtattgcaaatttctttgaaaaattattc |
15186506 |
T |
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| Q |
108 |
catcctctgcagacaattctaaagttgaattcacatttcctatagaagaattaatagaaaaacatgaggattctttttgggtca-----------atttg |
196 |
Q |
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| T |
15186505 |
catcctctgcagacaattctaaagttgaattcacatttcctatacaacaattaatagaaaaacatgaggattctttttgggtcagttgggactcgatttg |
15186406 |
T |
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| Q |
197 |
tttgggaaaatttcttgggtcagttgggactcgatttctagtgttagatttggggtgagggggaatggcttggaaatggcgacagaggttgtttatatgg |
296 |
Q |
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| T |
15186405 |
tttgggaaaatttattgggtcagttgggactcgatttctagtgttagatttggggtgagggggaatggcttggaaatggcgacagaggttgtttatatgg |
15186306 |
T |
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| Q |
297 |
gaggaggatatattaagcgagtgttgtgttttacttcttgatgttgttttgcagcatgatgtggtggatacgtggaaataacatttagatccttctaaag |
396 |
Q |
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| T |
15186305 |
gaggaggatatattaagcgagtgttgtgttttacttcttgatgttgttttgcagcatgatgtggtggatacgtggaaataacatttagatccttctaaag |
15186206 |
T |
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| Q |
397 |
gttatactatttgtggtgtctatcatttgttgactatagcaaaccaacttgttcagtcaacattatcagatttaatgtgacataaacaagttcctttgaa |
496 |
Q |
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| T |
15186205 |
gttatactatttgtggtgtctatcatttgttgactatagcaaaccaacttgttcagtcaacattatcagatttaatgtgacataaacaagttcctttgaa |
15186106 |
T |
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| Q |
497 |
agctatgttg |
506 |
Q |
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| T |
15186105 |
agttatgttg |
15186096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 284 - 498
Target Start/End: Complemental strand, 33217805 - 33217591
Alignment:
| Q |
284 |
gttgtttatatgggaggaggatatattaagcgagtgttgtgttttacttcttgatgttgttttgcagcatgatgtggtggatacgtggaaataacattta |
383 |
Q |
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| T |
33217805 |
gttgtttgcatgggaggagaaaatattatggtagtgttgtgatatccttcttgatgttgttttacaggttgatgtggtggatacatggaaatggtatata |
33217706 |
T |
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| Q |
384 |
gatccttctaaaggttatactatttgtggtgtctatcatttgttgactatagcaaaccaacttgttcagtcaacattatcagatttaatgtgacataaac |
483 |
Q |
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| T |
33217705 |
gatccttcaaaacgttatattgtttgtggtgtctatcatttgctgacaacggaggaccaacttggtgattcaacattatctgatttaatgtcacataaac |
33217606 |
T |
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| Q |
484 |
aagttcctttgaaag |
498 |
Q |
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| T |
33217605 |
aagttcctttgaaag |
33217591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 318 - 432
Target Start/End: Complemental strand, 9409292 - 9409178
Alignment:
| Q |
318 |
tgttgtgttttacttcttgatgttgttttgcagcatgatgtggtggatacgtggaaataacatttagatccttctaaaggttatactatttgtggtgtct |
417 |
Q |
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|||| |||||| ||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||| ||||||||| |||| ||||||| |
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| T |
9409292 |
tgttatgttttgcttcttgatgttgttttgcaggttgacgtggtggatacgtgggaatggtatttagatccttctaagggttatactgtttgcggtgtct |
9409193 |
T |
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| Q |
418 |
atcatttgttgacta |
432 |
Q |
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| T |
9409192 |
atcatttgttgacta |
9409178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 315 - 498
Target Start/End: Original strand, 26385693 - 26385876
Alignment:
| Q |
315 |
gagtgttgtgttttacttcttgatgttgttttgcagcatgatgtggtggatacgtggaaataacatttagatccttctaaaggttatactatttgtggtg |
414 |
Q |
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| T |
26385693 |
gagtgttgtgctttgtttcttgatgttgttttgtaggttgatgtggtggatacttggaaatgacatgtagatcctcctaaaagttatactatgcacggca |
26385792 |
T |
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| Q |
415 |
tctatcatttgttgactatagcaaaccaacttgttcagtcaacattatcagatttaatgtgacataaacaagttcctttgaaag |
498 |
Q |
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| T |
26385793 |
tctataatttgttgactacggtggatcaacctgttcactcagtgttaacaaatttaatgtgacataaacaagttcctttgaaag |
26385876 |
T |
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