View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4654-Insertion-14 (Length: 471)
Name: NF4654-Insertion-14
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654-Insertion-14 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 4 - 471
Target Start/End: Complemental strand, 38636119 - 38635650
Alignment:
| Q |
4 |
aacacaaggtagagtggaactaataaataaaagcaattacgtttgacttggataattaattgatcaatccttctaaatatgatgcatttaacaaatgatc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38636119 |
aacacaaggtagagtggaactaataaataaaagcaattacgtttgacttggataattaattgatcaatccttctaaatatgatgcatttaacaaatgatc |
38636020 |
T |
|
| Q |
104 |
tttgagcaatttggggttgtttaaactatatat--tcaccacttcattataattttggcattcaagaaaaattggattgacaataatctggattgtttcn |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38636019 |
tttgagcaatttggggttgtttaaactatatatattcaccacttcattataattttggcattcaagaaaaattggattgacaataatctggattgtttca |
38635920 |
T |
|
| Q |
202 |
nnnnnnnnnnnncagtatggataacattttgtcnnnnnnncaaacaatctagataacccttgtattgtcagcataaagaggtgttgtttctatttgggga |
301 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38635919 |
aaaagaaaaaaacagtatggataacattttgtcaaaaaaacaaacaatctagataacccttgtattgtcagcataaagaggtgttgtttctatttgggga |
38635820 |
T |
|
| Q |
302 |
aatcctcggtcaactagaagaccacgaagccaaattattttaaaacgagtgatagacctgtctcgatactcatattcagtgaaagacatagagagtcatg |
401 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38635819 |
aatccttggtcaactagaagaccacgaagccaaattattttaaaacgagtgatagacctgtctcgatactcatattcagtgaaaggcatagagagtcatg |
38635720 |
T |
|
| Q |
402 |
cttgcgttttactcttctaagaaatcaaagaaccaagaaacctgtcacatatgacagatcttcaagtata |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38635719 |
cttgcgttttactcttctaagaaatcaaagaaccaagaaacctgtcacatatgacagatcttcaagtata |
38635650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 15532 - 15614
Alignment:
| Q |
260 |
cttgtattgtcagcataaagaggtgttgtttctatttggggaaatcctcggtcaactagaagaccacgaagccaaattatttt |
342 |
Q |
| |
|
|||||||||||||||||||| | |||| ||| |||| |||||||| | ||| | | |||||||||||||||||||||||| |
|
|
| T |
15532 |
cttgtattgtcagcataaagtgaggttggctctgtttgaggaaatccaagttcagccaaaagaccacgaagccaaattatttt |
15614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 17603130 - 17603211
Alignment:
| Q |
260 |
cttgtattgtcagcataaagaggtgttgtttctatttggggaaatcctcggtcaactagaagaccacgaagccaaattattt |
341 |
Q |
| |
|
|||||||||| ||||||||| | |||| |||||||| |||||||| | ||| | | ||||||||||||||||||||||| |
|
|
| T |
17603130 |
cttgtattgttagcataaagtgaggttggctctatttgaggaaatccaagttcagccaaaagaccacgaagccaaattattt |
17603211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University