View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4654-Insertion-15 (Length: 399)
Name: NF4654-Insertion-15
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654-Insertion-15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 7 - 399
Target Start/End: Complemental strand, 6626354 - 6625962
Alignment:
| Q |
7 |
accaaggttatcccttgactacccaacagctgcacgccgtgaaaggttatctctcgaatacccaacaactgcacctcctcccagtgttcaccccttaccc |
106 |
Q |
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| T |
6626354 |
accaaggttatcccttgactacccaacagctgcacgccgtgaaaggttatctcttgaatacccaacaactgcacctcctcccagtgttcacccgttaccc |
6626255 |
T |
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| Q |
107 |
ttgcctccttggcctggaacttccttaccttcaccctctgccaatgctacctattctcaacctggagtggctaagacagagtccttatctatgaaaagtc |
206 |
Q |
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| T |
6626254 |
ttgcctccttggcctggaacttccttaccttcaccctctgccaatgctacctattctcaacctggagtggctaagacagagtccttatctatgaaaagtc |
6626155 |
T |
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| Q |
207 |
aatggcaaaagggtaaacttatagggcgaggtacttttggaagtgtttatgttgccactaataggtatgtgtaccaaagttaggcaaccagtttgagcta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6626154 |
aatggcaaaagggtaaacttatagggcgaggtacttttggaagtgtttatgttgccactaataggtatgtgtaccaaagttaggcaaccagtttgagcta |
6626055 |
T |
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| Q |
307 |
ttcacttttctctttctcatctggcatccctgaaacatattttcattccttgcagagaaactggagcattgtgtgcaatgaaggaagcagaca |
399 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6626054 |
ttcacttttctctttctcatctggcatctctgaaacatattttcattccttgcagagaaactggagcattgtgtgcaatgaaggaagcagaca |
6625962 |
T |
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