View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4654-Insertion-19 (Length: 208)
Name: NF4654-Insertion-19
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654-Insertion-19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 28092033 - 28091833
Alignment:
| Q |
8 |
catatcctacctaaatcacttcttttgggtgatcatgagacagatgaaggccacaatacgagcaactataccgtaaaaaatgaggacagctagacaaata |
107 |
Q |
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| T |
28092033 |
catatcctacctaaatcacttcttttgggtgatcatgagacagatgaaggccacaatacgagcaactataccgtaaaaaatgaggacagctagacaaata |
28091934 |
T |
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| Q |
108 |
ggccaatcattgacattataaccgctattcatcagtgaactacaacgagttatcagccatacgccggtgtacctgaagnnnnnnntattagattgaaata |
207 |
Q |
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| T |
28091933 |
ggccaatcattgacattataaccgctattcatcagtgaactacaacgagttatcagccatacgccggtgtacctgaagaaaaaaatattagattgaaata |
28091834 |
T |
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| Q |
208 |
g |
208 |
Q |
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| T |
28091833 |
g |
28091833 |
T |
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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 41039892 - 41040022
Alignment:
| Q |
51 |
atgaaggccacaatacgagcaactataccgtaaaaaatgaggacagctagacaaataggccaatcattgacattataaccgctattcatcagtgaactac |
150 |
Q |
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|||||||| ||||| || |||| ||| || | |||||||| ||| ||||||||| |||| ||||||| || |||||| || |||||||||||||||| |
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| T |
41039892 |
atgaaggctacaattcgggcaattattccattcaaaatgagtacaagtagacaaatgagccattcattgagatcataaccactgttcatcagtgaactac |
41039991 |
T |
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| Q |
151 |
aacgagttatcagccatacgccggtgtacct |
181 |
Q |
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| T |
41039992 |
aacgagttatcaaccatactccagtgtacct |
41040022 |
T |
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