View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4654-Insertion-2 (Length: 1040)
Name: NF4654-Insertion-2
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654-Insertion-2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 600; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 49 - 862
Target Start/End: Original strand, 37782847 - 37783650
Alignment:
| Q |
49 |
ctttgtgaaatagagaaaagaaagccacttataacattatggtcggtcaatattatcaatattactaaataccaattagtatgtcacccaagtgctactc |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||||| ||||| |
|
|
| T |
37782847 |
ctttgtgaaatagagaaaagaaagccacttaaaacattatggtcggtcaatattaccaatattactaaatactaattactatgtcaccaaagtgttactc |
37782946 |
T |
|
| Q |
149 |
tttgatgatggtctcacgaatcttaaaaggcatgtcattcacgatccatctttgatggtgtagatgtactataattgagaaagggttgagatggaagatc |
248 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37782947 |
cttgatgatggtttcacgaattttaaaaggcatgtcattcacgatccatctttgatggtgtagatgtactataattgagaaagggttgagatggaagatc |
37783046 |
T |
|
| Q |
249 |
ttaattggttcttgggatcnnnnnnnnnnnagaagaaggttcttgggatcgtttacaaaggtgtaggagaatgtaaatgacacgtcattttgtaagccat |
348 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37783047 |
ttaattggttcttgggatttttttttt------agaaggttcttgggatcgtttaaaaaggtgtaggagaatgtaaatgacacgtcattttgtaagccat |
37783140 |
T |
|
| Q |
349 |
cggatccccatgaccgcaaacatgttttttcaattctatccaaacttgaacaactatcaactcactttgaatatagaagggagtaattcttgtgtgatca |
448 |
Q |
| |
|
||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37783141 |
cgggttcccatgaccgcaaacatgctttttcaattctatccaaacttgaacaactatcaactcactttgaatatagaagggagtaattcttgtgtgatca |
37783240 |
T |
|
| Q |
449 |
caacaatttagttactttatttggacacaaac-nnnnnnngtaatgaaatgatatatatttttctaatcattgaatgatgaatatgctttttgtatgttc |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37783241 |
caacaatttagttactttatttggacacaaacaaaaaaaaataatgaaatgatatatatttttataatcattgaatgatgaataggctttttgtatgttc |
37783340 |
T |
|
| Q |
548 |
gtttaagtgttgtgtttaaactcatgtgaccatatacgaattactcaatnnnnnnncctatgaacataactcatacaatatatgatattccagttttatt |
647 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37783341 |
gtttaagtgttgtgtttaaactcatgtgaccatatacgaattactcaataaaaaaacctatgaacataactcatacaatatatgatattccagttttatt |
37783440 |
T |
|
| Q |
648 |
tcataccatctccctaaataaggtaaagcattttacagnnnnnnnnnnnatattataaatgaatgcattatataaaacaagtgcagaagataaactttat |
747 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37783441 |
tcataccatctccctaaataaggtaaagcattttacag----tttttttatattataaatgaatgcattatataaaacaagtgcagaagataaactttat |
37783536 |
T |
|
| Q |
748 |
aatttactatatcataatgaatttataaggtatataatatcatccatatagttataggcattgaggattccttaatcacaacacatggataccgtgcaac |
847 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37783537 |
aatttaccatatcataatgaatttataaggtatataatatcatccatatagttataggcattgaggattccttaatcacaacacatggataccgtgcaac |
37783636 |
T |
|
| Q |
848 |
accgtaactttttag |
862 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
37783637 |
a-cgtaactttttag |
37783650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 872 - 968
Target Start/End: Complemental strand, 41985758 - 41985659
Alignment:
| Q |
872 |
ggttacaaagataaattaaaa-ggaaaaaca-cagagaaaa-taaactaagctctagggtaaaatactcctaaggcgtcgttcttgatcagtggtagtag |
968 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41985758 |
ggttagaaagataaattaaaaaggaaaaacaacagagaaaaataaactaagctctagggtaaaatactcctaaggtgtcgttcttgatcagtggtagtag |
41985659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 872 - 968
Target Start/End: Original strand, 35133063 - 35133162
Alignment:
| Q |
872 |
ggttacaaagataaattaaaaggaaaaac--acagagaa-aataaactaagctctagggtaaaatactcctaaggcgtcgttcttgatcagtggtagtag |
968 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35133063 |
ggttacaaagataaattaaaaggaaaaaacaacaaagaagaaaaaactaagctctagggtaaagaactcctaaggcgtcgttcttgatcagtggtagtag |
35133162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 872 - 959
Target Start/End: Complemental strand, 19267719 - 19267629
Alignment:
| Q |
872 |
ggttacaaagataaattaaaaggaaaaac--acagagaa-aataaactaagctctagggtaaaatactcctaaggcgtcgttcttgatcag |
959 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
19267719 |
ggttacaaagataaattaaaaggaaaaagcaacagagaagaataaactaagctctaggataaagaactcctaaggcgtcgttcttgatcag |
19267629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 872 - 959
Target Start/End: Original strand, 3776893 - 3776983
Alignment:
| Q |
872 |
ggttacaaagataaattaaaaggaaaaac--acagagaa-aataaactaagctctagggtaaaatactcctaaggcgtcgttcttgatcag |
959 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
3776893 |
ggttacaaagataaattaaaaggaaaaaacaacagagaagaatgaactaagctctagaataaagaactcctaaggcgtcgttcttgatcag |
3776983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 872 - 945
Target Start/End: Complemental strand, 40330457 - 40330379
Alignment:
| Q |
872 |
ggttacaaagataaattaaaaggaaaaaca----cagagaaaa-taaactaagctctagggtaaaatactcctaaggcg |
945 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40330457 |
ggttacaaagataaattaaaaggaaaaaaaacaacagagaaaaataaactaagctctagggtaaagtactcctaaggcg |
40330379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 48717020 - 48717074
Alignment:
| Q |
54 |
tgaaatagagaaaagaaagccacttataacattatggtcggtcaatattatcaat |
108 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| ||| |||||||||||||| |||||| |
|
|
| T |
48717020 |
tgaaagagagagaagaaagccacttgtaagattgtggtcggtcaatatcatcaat |
48717074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University