View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4654-Insertion-3 (Length: 1008)
Name: NF4654-Insertion-3
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 924; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 924; E-Value: 0
Query Start/End: Original strand, 7 - 1001
Target Start/End: Original strand, 44913641 - 44914636
Alignment:
| Q |
7 |
acaaaattggattattctcgatgtttaattatgttttcacttttcagattatttgccttagtgccactacaaacaaactctcaaacatacagaagcaggc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44913641 |
acaaaattggattattctcgatgtttaattatgttttcacttttcagattatttgccttagtgccactacaaacaaactctcaaacatacagaagcaggc |
44913740 |
T |
|
| Q |
107 |
agaggaatatgctgctttgatcatggaagaactagaccctgatgatactggatttatcatggtaattattacttataagatcatcttatacactactgac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44913741 |
agaggaatatgctgctttgatcatggaagaactagaccctgatgatactggatttatcatggtaattattacttataagatcatcttatacactactgac |
44913840 |
T |
|
| Q |
207 |
ttgatcttcgtattcatatttttcacttggttgctagtggtacttaagctgttatttggtcgctctgagcagatttttgaaaggatcttggcatgtatta |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
44913841 |
ttgatcttcgtattcatatttttcacttggttgctagtggtacttaagctgttatttggtcgctctgtgcagattttcgaaaggatcttggcatgtatta |
44913940 |
T |
|
| Q |
307 |
tttattattccttatataaagctttatttccttcaattagagcatctttaaatgacatgtaaaaatgttgtgtctcacattataattttattcttcattt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
44913941 |
tttattattccttatataaagctttatttccttcaattagagcatctttaaatgacatgtaaaaatgttttgtctcacattataattttattcctcattt |
44914040 |
T |
|
| Q |
407 |
ctctattgattcaacctcaatatttgtagtgaactcttgatgatctcaaacattaaagttgtgttgctaatatactgttgactgtctactgctctcattt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
44914041 |
ctctattgattcaacctcaatatttgtagtgaactcttgatgatctcaaacattaaagttctgttgctaatatattgttgactgtctactgctctcattt |
44914140 |
T |
|
| Q |
507 |
tttaataaatttaattgtttttcacttacctaatctctgtatcaattgtttatccctagtctctatctcatactgatgcagcttctcattttaaccgtaa |
606 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
44914141 |
tttaataaatttaattgtttttcatttacctaatctctgtatcaattgtttatccctagtctctatctcatactgatgttgcttctcattttagccgtaa |
44914240 |
T |
|
| Q |
607 |
ttttttggccatttggtggttattgttttgaatacaggtaaatgacctagagatactcttgttgcatggaccaactcattctacacgaggagatagtaag |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44914241 |
ttttttggccatttggtggttattgttttgaatgcaggtaaatgacctagagatactcttgttgcatggaccaactcattctacacgaggagatagtaag |
44914340 |
T |
|
| Q |
707 |
tacctgagccaaatgctaagcataaagcttaagggtacatatgaatacaatccatttaggaagaggtatagagatgccatttactttctgcaggacaatt |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44914341 |
tacctgagccaaatgctaagcataaagcttaagggtacatatgaatacaatcctgttcggaagaggtatagagatgccatttactttctgcaggacaatt |
44914440 |
T |
|
| Q |
807 |
ggcaaagaacttggatattggtactatggattggtgttatgtgtggactatttgcctacaaattcatgcagtacagaagaaaagatgcttatgaagtaat |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44914441 |
ggcaaagaacttggatattggtactatggattggtgttatgtgtggtctatttgcctacaaattcatgcagtacagaagaaaagatgcttatgaagtaat |
44914540 |
T |
|
| Q |
907 |
gggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatcttg-taactgtttgtcgaaacaccatcacatg |
1001 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
44914541 |
gggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatcttgttacctgtttgtcgaaacaccatcacatg |
44914636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 615 - 993
Target Start/End: Original strand, 44898338 - 44898714
Alignment:
| Q |
615 |
ccatttggtggttattgttttgaatacaggtaaatgacctagagatactcttgttgcatggaccaactcattctacacgaggagatagtaagtacctgag |
714 |
Q |
| |
|
||||||| || ||||||||| ||| ||||||||| ||||| ||| ||| |||||||||| |||||||||| ||| | ||||||| ||||||||||| || |
|
|
| T |
44898338 |
ccatttgttgattattgtttggaagacaggtaaacgaccttgaggaactattgttgcatgtaccaactcatcctaaaagaggagaaagtaagtacctaag |
44898437 |
T |
|
| Q |
715 |
ccaaatgctaagcataaagcttaagggtacatatgaatacaatccatttaggaagaggtatagagatgccatttactttctgcaggacaattggcaaaga |
814 |
Q |
| |
|
| |||| |||||||||||||| |||| || ||||| |||||| |||||||| || ||||| || ||| |||||| || | |||||||| | ||| |
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|
| T |
44898438 |
cgaaatactaagcataaagctaaaggcta---atgaaaacaatcttgttaggaagtggcatagaaataccaagtactttttggaacacaattggaagaga |
44898534 |
T |
|
| Q |
815 |
acttggatattggtactatggattggtgttatgtgtggactatttgcctacaaattcatgcagtacagaagaaaagatgcttatgaagtaatgggtcatt |
914 |
Q |
| |
|
| ||||||||| | | | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||||| ||||| |||| |
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|
| T |
44898535 |
atttggatattagcattgtggattggtgttatgtgtggtctatttgcctacaaattcatgcagtatagaagaaaagctgcatatgaagtgatgggccatt |
44898634 |
T |
|
| Q |
915 |
gtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatctt-gtaactgtttgtcgaaacacc |
993 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||| ||||||||| |
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|
| T |
44898635 |
gtgtctgtatggctaaaggtgcagctgagacactcaaattgaatatggccattatcttattacctgtttgccgaaacacc |
44898714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 783 - 992
Target Start/End: Original strand, 44885175 - 44885385
Alignment:
| Q |
783 |
ccatttactttctgcaggacaattggcaaagaacttggatattggtactatggattggtgttatgtgtggactatttgcctacaaattcatgcagtacag |
882 |
Q |
| |
|
|||| |||||||||| ||||| |||| | |||| ||||||||| ||| | |||||||| ||||||| || ||||||||||||||||| ||||||| | |
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|
| T |
44885175 |
ccatctactttctgccggacagttggaagagaaattggatattagtattgtggattggagttatgttaggtctatttgcctacaaatttgtgcagtatcg |
44885274 |
T |
|
| Q |
883 |
aagaaaagatgcttatgaagtaatgggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatcttg-taactgtt |
981 |
Q |
| |
|
|||||||| ||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
44885275 |
aagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaaaggtgcagctgagacactcaaattgaacatggctcttatcttgttacctgtt |
44885374 |
T |
|
| Q |
982 |
tgtcgaaacac |
992 |
Q |
| |
|
|| |||||||| |
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|
| T |
44885375 |
tgccgaaacac |
44885385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 44898128 - 44898215
Alignment:
| Q |
52 |
agattatttgccttagtgccactacaaacaaactctcaaacatacagaagcaggcagaggaatatgctgctttgatcatggaagaact |
139 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | |||| ||||||| |||| ||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
44898128 |
agattattagccttagtgccactgcaaacgacctcttaaacataaagaatcaggccggggaatacgctgctttgatcatggaagaact |
44898215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 44884632 - 44884708
Alignment:
| Q |
74 |
tacaaacaaactctcaaacatacagaagcaggcagaggaatatgctgctttgatcatggaagaactagaccctgatg |
150 |
Q |
| |
|
|||||||| |||| ||| |||| |||| || |||| | ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
44884632 |
tacaaacagactcgcaagcatagagaatcatgcagggcaatatgctgctttgatcatggaagaactagatcctgatg |
44884708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 39982062 - 39982187
Alignment:
| Q |
49 |
ttcagattatttgccttagtgccactacaaacaaactctcaaacatacagaagcaggcagaggaatatgctgctttgatcatggaagaactagaccctga |
148 |
Q |
| |
|
|||||||||| ||||| ||||||||| | |||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||||||||||||| || |
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|
| T |
39982062 |
ttcagattatatgcctgagtgccactgccaacaaactgtcaaatatccagaaacaagcagaggaatatgcggctttgatcatggaagaactagacccgga |
39982161 |
T |
|
| Q |
149 |
tgatactggatttatcatggtaatta |
174 |
Q |
| |
|
||| || |||| |||| ||||||||| |
|
|
| T |
39982162 |
tgacacaggatatatcttggtaatta |
39982187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 695 - 998
Target Start/End: Original strand, 39982331 - 39982635
Alignment:
| Q |
695 |
ggagatagtaagtacctgagccaaatgctaagcataaagcttaagggtacatatgaatacaatccatttaggaagaggtatagagatgccatttactttc |
794 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||| | ||||| ||| ||||| ||| || | ||||||||||| ||| ||||| |
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|
| T |
39982331 |
ggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtacttct |
39982430 |
T |
|
| Q |
795 |
tgcaggacaattggcaaagaacttggatattggtactatggattggtgttatgtgtggactatttgcctacaaattcatgcagtacagaagaaaagatgc |
894 |
Q |
| |
|
| ||||| || |||| |||| | ||| |||| | || ||||||||||| |||| || |||||||||| ||||| |||| || || |||| | ||| |
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|
| T |
39982431 |
tccaggataactggcgaagatcctgggtatttgctctgtggattggtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgc |
39982530 |
T |
|
| Q |
895 |
ttatgaagtaatgggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatctt-gtaactgtttgtcgaaacacc |
993 |
Q |
| |
|
||| |||| ||||| || |||||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||| | ||||||| ||||||||| |
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|
| T |
39982531 |
atataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacacc |
39982630 |
T |
|
| Q |
994 |
atcac |
998 |
Q |
| |
|
||||| |
|
|
| T |
39982631 |
atcac |
39982635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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