View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4654-Insertion-5 (Length: 1030)

Name: NF4654-Insertion-5
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4654-Insertion-5
NF4654-Insertion-5
[»] chr4 (21 HSPs)
chr4 (8-467)||(23820483-23820942)
chr4 (24-256)||(23829663-23829894)
chr4 (538-673)||(54239531-54239666)
chr4 (571-675)||(13085154-13085260)
chr4 (572-721)||(2053071-2053219)
chr4 (571-725)||(38223090-38223242)
chr4 (173-231)||(23833658-23833716)
chr4 (905-989)||(54239216-54239301)
chr4 (571-646)||(22716609-22716685)
chr4 (571-646)||(22988532-22988608)
chr4 (571-646)||(9596893-9596968)
chr4 (571-628)||(19684796-19684853)
chr4 (596-646)||(6659417-6659468)
chr4 (876-954)||(15634358-15634437)
chr4 (909-991)||(24414331-24414414)
chr4 (536-653)||(28287681-28287797)
chr4 (597-646)||(22691262-22691312)
chr4 (587-646)||(4053098-4053157)
chr4 (808-859)||(38223325-38223376)
chr4 (630-676)||(18490429-18490475)
chr4 (475-524)||(37265820-37265870)
[»] chr5 (9 HSPs)
chr5 (541-676)||(35160760-35160895)
chr5 (551-676)||(7775339-7775463)
chr5 (550-646)||(19677172-19677268)
chr5 (810-988)||(36844629-36844808)
chr5 (901-990)||(35161118-35161208)
chr5 (541-676)||(36844363-36844498)
chr5 (572-676)||(15385018-15385122)
chr5 (596-675)||(40778873-40778954)
chr5 (541-676)||(14504040-14504175)
[»] chr7 (16 HSPs)
chr7 (541-671)||(22572421-22572551)
chr7 (550-676)||(32052963-32053088)
chr7 (571-646)||(31577245-31577320)
chr7 (832-1003)||(16931145-16931318)
chr7 (832-1003)||(16936528-16936701)
chr7 (571-675)||(4303371-4303477)
chr7 (815-922)||(5678510-5678618)
chr7 (815-922)||(5703562-5703670)
chr7 (572-675)||(32936824-32936926)
chr7 (544-627)||(5678248-5678331)
chr7 (544-627)||(5703300-5703383)
chr7 (829-912)||(31578165-31578249)
chr7 (596-646)||(13882773-13882824)
chr7 (572-650)||(4668229-4668307)
chr7 (596-646)||(859243-859294)
chr7 (596-646)||(1217247-1217298)
[»] chr8 (17 HSPs)
chr8 (538-674)||(15081494-15081630)
chr8 (541-676)||(9295255-9295390)
chr8 (571-676)||(12310783-12310888)
chr8 (571-675)||(18180745-18180851)
chr8 (577-676)||(38082155-38082255)
chr8 (878-987)||(10404663-10404773)
chr8 (833-930)||(15081245-15081343)
chr8 (573-676)||(2262666-2262769)
chr8 (550-676)||(10456238-10456364)
chr8 (596-675)||(22921937-22922018)
chr8 (815-934)||(26150346-26150466)
chr8 (596-646)||(42891751-42891802)
chr8 (905-998)||(38082464-38082558)
chr8 (905-1003)||(16848323-16848422)
chr8 (596-675)||(22520886-22520967)
chr8 (596-646)||(22926735-22926786)
chr8 (596-675)||(22512133-22512214)
[»] chr2 (10 HSPs)
chr2 (551-676)||(5841225-5841350)
chr2 (550-646)||(44675263-44675359)
chr2 (571-646)||(8781465-8781539)
chr2 (541-676)||(18725626-18725763)
chr2 (806-903)||(18725890-18725987)
chr2 (597-646)||(2155918-2155968)
chr2 (596-675)||(27956241-27956322)
chr2 (596-646)||(22011387-22011438)
chr2 (596-675)||(27952405-27952486)
chr2 (596-644)||(33655581-33655630)
[»] chr3 (19 HSPs)
chr3 (541-675)||(25340115-25340250)
chr3 (543-653)||(20398434-20398544)
chr3 (571-676)||(4580483-4580589)
chr3 (571-646)||(19949954-19950029)
chr3 (831-991)||(25340400-25340562)
chr3 (832-987)||(33620328-33620485)
chr3 (586-646)||(40593520-40593580)
chr3 (806-888)||(25857435-25857517)
chr3 (541-675)||(33620041-33620174)
chr3 (578-655)||(1151145-1151221)
chr3 (571-646)||(41218755-41218830)
chr3 (596-675)||(5128830-5128911)
chr3 (908-988)||(27484707-27484788)
chr3 (541-676)||(1697033-1697168)
chr3 (596-646)||(3063824-3063875)
chr3 (816-912)||(39913535-39913632)
chr3 (599-646)||(53012977-53013025)
chr3 (596-646)||(3068962-3069013)
chr3 (596-646)||(43306759-43306810)
[»] chr6 (16 HSPs)
chr6 (551-676)||(8568633-8568757)
chr6 (550-675)||(11190420-11190545)
chr6 (565-676)||(27142533-27142644)
chr6 (584-646)||(2939768-2939829)
chr6 (829-988)||(19474944-19475105)
chr6 (822-1004)||(2339364-2339548)
chr6 (571-676)||(2339114-2339217)
chr6 (571-676)||(26571070-26571176)
chr6 (806-914)||(2939987-2940096)
chr6 (541-646)||(13645842-13645947)
chr6 (815-899)||(3565436-3565520)
chr6 (571-646)||(19474685-19474760)
chr6 (838-986)||(5038729-5038879)
chr6 (829-970)||(13394500-13394642)
chr6 (816-913)||(19232010-19232108)
chr6 (937-993)||(10779515-10779572)
[»] scaffold0251 (2 HSPs)
scaffold0251 (551-653)||(8198-8300)
scaffold0251 (901-998)||(8495-8593)
[»] chr1 (13 HSPs)
chr1 (551-676)||(11923812-11923936)
chr1 (541-638)||(42071354-42071451)
chr1 (822-933)||(42646342-42646454)
chr1 (806-903)||(42071617-42071714)
chr1 (619-676)||(50005237-50005294)
chr1 (901-998)||(50005473-50005571)
chr1 (586-674)||(12486303-12486392)
chr1 (543-676)||(28260189-28260321)
chr1 (571-676)||(45085666-45085773)
chr1 (596-646)||(50857531-50857582)
chr1 (817-1004)||(49043619-49043808)
chr1 (597-646)||(40804611-40804660)
chr1 (598-655)||(42646617-42646674)
[»] scaffold0154 (2 HSPs)
scaffold0154 (615-668)||(28709-28762)
scaffold0154 (901-947)||(29062-29108)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Original strand, 23820483 - 23820942
Alignment:
Q  8 gttagaacagccgcatcagcttttccccaacgttcttcttctatgttatgtacatgatgacattgcacattgcaaatacaatatccttgaaagttaacaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  23820483 gttagaacagccgcatcagcttttccccaacgttcttcttctatgttatgtacatgatgacattgcacattgcaaatacactatccttgaaaattaacaa 23820582  T
Q  108 aagtgaatgtctccacatgaggtcattccatgccataaacatttgttactcaatagagtgtacatatcttactatagctaatgtttgagaactaaacttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23820583 aagtgaatgtctccacatgaggtcattccatgccataaacatttgttactcaatagattgtacatatcttactatagctaatgtttgagaactaaacttc 23820682  T
Q  208 tcttggaaattctgcttgttgagagtgcttatgtctatgaatagttggannnnnnnggtatttgtaaattgtaacagctaaataactgcattgctagtgc 307  Q
    |||||||||||||| ||| ||||||||| || |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  23820683 tcttggaaattctgtttgatgagagtgcctaagtctatgaatagttggaattttttggtatttgtaaattgtaacagctaaataactgcattgctagtgc 23820782  T
Q  308 ttttgtatgtttatcttgctagctcagttttgttatggtgtttcctaatacaatatacaataatgatagataagcacactttannnnnnnacactcagtc 407  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || ||||||       || |||| ||    
T  23820783 ttttgtatgtttatcttgctagctcagttttgttatgctgtttcctaatacaatatacaacaatgatagataaacatactttatttttctacgctcattc 23820882  T
Q  408 aacgtcccattttctctctatttctcttattctatcacgtcgtcaaactatcacatcact 467  Q
    ||| || |||||||||||||| |||||||||||||||| || |||||||||| |||||||    
T  23820883 aacatctcattttctctctatctctcttattctatcacatcatcaaactatcgcatcact 23820942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 24 - 256
Target Start/End: Original strand, 23829663 - 23829894
Alignment:
Q  24 cagcttttccccaacgttcttcttctatgttatgtacatgatgacattgcacattgcaaatacaatatccttgaaagttaacaaaagtgaatgtctccac 123  Q
    |||||| ||| ||||| ||  |||||||||| |||||||||   || |||||| |||||||||| |||||||| ||||| |||||| |||||||| ||||    
T  23829663 cagcttatccacaacgctcggcttctatgttctgtacatga---cactgcacactgcaaatacactatccttggaagttgacaaaactgaatgtccccac 23829759  T
Q  124 atgaggtcattccatgccataaacatttgt--tactcaatagagtgtacatatcttactatagctaatgtttgagaactaaacttctcttggaaattctg 221  Q
    ||||||| |||||| | | |||||||||||  |||| |||| | |||| |||||||||||||| |||||| ||||||||||| || ||||||| ||||||    
T  23829760 atgaggtgattccacgtcgtaaacatttgtgttacttaataaattgtagatatcttactatagttaatgtatgagaactaaatttttcttggacattctg 23829859  T
Q  222 cttgttgagagtgcttatgtctatgaatagttgga 256  Q
    |||||||| ||||| |||||| | ||||| |||||    
T  23829860 cttgttgatagtgcatatgtcaaagaataattgga 23829894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 538 - 673
Target Start/End: Complemental strand, 54239666 - 54239531
Alignment:
Q  538 ttaacgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatcc 637  Q
    |||||| |||| |||||||  ||||  ||||| ||||||||||  | |||||||||| ||| |||| ||||| |||||||||||||||||||||||||||    
T  54239666 ttaacgtagaacggaagcacagattagcaaacgctaaacctaagaggtaaacagacaagttacaagggacaaacctatcaaataagggttttcggaatcc 54239567  T
Q  638 accagaattaagaaaagttatcgataattttattga 673  Q
    |||| |||| ||||||||| ||||||||||||||||    
T  54239566 accaaaattgagaaaagttctcgataattttattga 54239531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 571 - 675
Target Start/End: Original strand, 13085154 - 13085260
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatc-aaataagggttttcggaatccaccagaattaagaaaagttatcg-ataatttt 668  Q
    ||||||||||| ||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||| |||| ||| ||  | ||| ||||||||    
T  13085154 ctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccaccaaaattgagagaaaatctcgaataatttt 13085253  T
Q  669 attgaat 675  Q
    |||||||    
T  13085254 attgaat 13085260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 572 - 721
Target Start/End: Original strand, 2053071 - 2053219
Alignment:
Q  572 taaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt-aagaaaagttatcg-ataatttta 669  Q
    ||||||||| | ||||||||||| ||||||||||||||  ||||||||||||||||| || ||||||| |||||| | |||||  | ||| |||||||||    
T  2053071 taaacctaacgaataaacagacaagttgcaagcgacaaatctatcaaataagggtttccgaaatccactagaattgaggaaaaagtctcgaataatttta 2053170  T
Q  670 ttgaatgnnnnnnnngtgtcttttaggctgcataaattatgtttaaatacta 721  Q
    |||||||        || ||| ||||||||||||| ||||||||||||||||    
T  2053171 ttgaatg---aataagtctctcttaggctgcataagttatgtttaaatacta 2053219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 571 - 725
Target Start/End: Original strand, 38223090 - 38223242
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaagaaaagttatcgataa-tttta 669  Q
    ||||||||||| |||||| ||| | | ||||| |||||| |||||||||||||||||| | |||||||| |||||| ||||||| | ||||||| |||||    
T  38223090 ctaaacctaaaagataaatagataggctgcaaacgacaaacctatcaaataagggtttacagaatccactagaattgagaaaag-tctcgataattttta 38223188  T
Q  670 ttgaatgnnnnnnnngtgtcttttaggctgcataaattatgtttaaatactagagg 725  Q
    |||||||        |||||| ||||| ||||||| ||||||||||||| ||||||    
T  38223189 ttgaatg--aaaaaagtgtctcttaggttgcataagttatgtttaaatattagagg 38223242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 23833658 - 23833716
Alignment:
Q  173 atcttactatagctaatgtttgagaactaaacttctcttggaaattctgcttgttgaga 231  Q
    |||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  23833658 atcttaatatagctaatgtttcagaaccaaacttctcttggacattctgcttgttgaga 23833716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 905 - 989
Target Start/End: Complemental strand, 54239301 - 54239216
Alignment:
Q  905 gtataattcgagtcaatccaacaccgaatgtcaaatctacactatttcaagtgaacctttcttgcgc-tcacttcatcttcgatac 989  Q
    |||||||| |||||||||| ||  |||||||||||||||||||||||  | ||| | |||||||||| ||||||||||||||||||    
T  54239301 gtataatttgagtcaatccgacttcgaatgtcaaatctacactattttcattgagcatttcttgcgcgtcacttcatcttcgatac 54239216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 571 - 646
Target Start/End: Complemental strand, 22716685 - 22716609
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatc-aaataagggttttcggaatccaccagaatt 646  Q
    |||||||||||  |||||| |||| |||||||||||||| |||||| ||| |||||||| |||||||||||||||||    
T  22716685 ctaaacctaaaatataaactgacaggttgcaagcgacaaacctatcaaaaaaagggtttccggaatccaccagaatt 22716609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 571 - 646
Target Start/End: Original strand, 22988532 - 22988608
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatc-aaataagggttttcggaatccaccagaatt 646  Q
    ||||| ||||| ||||||| |||| |||||||||||||| |||||| ||| |||||||| |||||||||||||||||    
T  22988532 ctaaatctaaaagataaactgacaggttgcaagcgacaaacctatcgaaaaaagggtttccggaatccaccagaatt 22988608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 571 - 646
Target Start/End: Complemental strand, 9596968 - 9596893
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt 646  Q
    ||||||||||| |||||| ||||| ||||||| ||| || |||||||||||||||||| |  ||||||||||||||    
T  9596968 ctaaacctaaaagataaaaagacaggttgcaaacgataaacctatcaaataagggtttccataatccaccagaatt 9596893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 571 - 628
Target Start/End: Original strand, 19684796 - 19684853
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttt 628  Q
    ||||||||||| ||||||||||||  ||||||||||||| ||||||||| ||||||||    
T  19684796 ctaaacctaaaagataaacagacagtttgcaagcgacaaacctatcaaacaagggttt 19684853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 596 - 646
Target Start/End: Original strand, 6659417 - 6659468
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  6659417 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaatt 6659468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 876 - 954
Target Start/End: Complemental strand, 15634437 - 15634358
Alignment:
Q  876 tactcgtgaggtctggggcttttcgaaagg-tataattcgagtcaatccaacaccgaatgtcaaatctacactatttcaa 954  Q
    |||||||||||||||  ||||| ||||| | ||||||| |||||||||| |||||  |||||||||||||| ||||||||    
T  15634437 tactcgtgaggtctgtagctttccgaaaagatataatttgagtcaatccgacaccagatgtcaaatctacaatatttcaa 15634358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 909 - 991
Target Start/End: Original strand, 24414331 - 24414414
Alignment:
Q  909 aattcgagtcaatccaacaccgaatgtcaaatctacactatttcaagtgaacctttcttgcgc-tcacttcatcttcgatacgc 991  Q
    ||||||||||||||| ||| |  || |||||||||||||||| ||||||| | ||||||||||  |||||||||||| ||||||    
T  24414331 aattcgagtcaatccgacatcagatatcaaatctacactattccaagtgagcatttcttgcgcgccacttcatcttctatacgc 24414414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 536 - 653
Target Start/End: Complemental strand, 28287797 - 28287681
Alignment:
Q  536 atttaacgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttc-ggaa 634  Q
    |||| |||||||| ||||||||| ||| |||||| |||||  |||| |||||||||| | ||||||||| |||| | | |||||  ||| ||||| ||||    
T  28287797 atttgacgcagaacggaagcaagaattaacaaacgctaaatttaaaagataaacagataagttgcaagcaacaaacttgtcaaa--aggattttccggaa 28287700  T
Q  635 tccaccagaattaagaaaa 653  Q
    |||||||||||| ||||||    
T  28287699 tccaccagaattgagaaaa 28287681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 597 - 646
Target Start/End: Complemental strand, 22691312 - 22691262
Alignment:
Q  597 ttgcaagcgacaatcctatc-aaataagggttttcggaatccaccagaatt 646  Q
    ||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  22691312 ttgcaagcgacaaacctatcgaaataagggtttccggaatccaccagaatt 22691262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 646
Target Start/End: Complemental strand, 4053157 - 4053098
Alignment:
Q  587 aacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt 646  Q
    |||| |||||| ||||||||||| |||||||| ||||| |||||| ||||||||| ||||    
T  4053157 aacaaacatgtagcaagcgacaaacctatcaagtaaggattttcgaaatccaccataatt 4053098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 808 - 859
Target Start/End: Original strand, 38223325 - 38223376
Alignment:
Q  808 ggttttaggcctttagacgatctcgaatgactaaattcacccctacatcatg 859  Q
    |||||| |||||| |||| | ||||||||||||||||||||||||| |||||    
T  38223325 ggttttgggccttcagacaacctcgaatgactaaattcacccctacgtcatg 38223376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 630 - 676
Target Start/End: Complemental strand, 18490475 - 18490429
Alignment:
Q  630 cggaatccaccagaattaagaaaagttatcgataattttattgaatg 676  Q
    ||||||| | ||||||| ||||||||| |||||||||||||||||||    
T  18490475 cggaatctatcagaattgagaaaagttctcgataattttattgaatg 18490429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 37265870 - 37265820
Alignment:
Q  475 tctctttgttttaaagtgtacac-acctcaaaaggtgtacacaacattttc 524  Q
    |||||||||||||||||||| || ||||||| |||||| ||||||||||||    
T  37265870 tctctttgttttaaagtgtatacaacctcaagaggtgtgcacaacattttc 37265820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 9e-42; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 541 - 676
Target Start/End: Original strand, 35160760 - 35160895
Alignment:
Q  541 acgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccacc 640  Q
    ||||||||  |||||||||||| |||||||||||||||||| |||||||||||| ||||||| |||||| ||| ||||||||||||||  ||| ||||||    
T  35160760 acgcagaacagaagcaaggattaacaaacactaaacctaaaagataaacagacaagttgcaaacgacaaacctgtcaaataagggtttcaggattccacc 35160859  T
Q  641 agaattaagaaaagttatcgataattttattgaatg 676  Q
    |||||||||||||||| |||||||||||||||||||    
T  35160860 agaattaagaaaagttctcgataattttattgaatg 35160895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 551 - 676
Target Start/End: Complemental strand, 7775463 - 7775339
Alignment:
Q  551 gaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaaga 650  Q
    ||||||||||||  |||||  |||||||||| |||||||||||| ||||||||| |||| ||| ||||| || |||||||||||||||| ||||||||||    
T  7775463 gaagcaaggattagcaaacgttaaacctaaaagataaacagacaagttgcaagctacaaacctgtcaaaaaaaggttttcggaatccactagaattaaga 7775364  T
Q  651 aaagttatcgataattttattgaatg 676  Q
    |||| | | |||||||||||||||||    
T  7775363 aaag-tctagataattttattgaatg 7775339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 550 - 646
Target Start/End: Original strand, 19677172 - 19677268
Alignment:
Q  550 ggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt 646  Q
    |||||||||||||  ||| | |||| |||||| |||||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  19677172 ggaagcaaggattagcaagcgctaagcctaaaagataaacagataggttgcaagcgacaaacctttcaaataagggttttcggaatccaccagaatt 19677268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 810 - 988
Target Start/End: Original strand, 36844629 - 36844808
Alignment:
Q  810 ttttaggcctttagacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcg-aaaggtat 908  Q
    |||| |||||| ||| ||| |||| ||| |||||||||||||||||||| ||||| | ||||||| | ||||| |  || ||| ||||||| |||| |||    
T  36844629 ttttgggccttcagatgatttcgagtgattaaattcacccctacatcatagcaaaactatgtgttatgctcgttaactccgggacttttcgaaaagttat 36844728  T
Q  909 aattcgagtcaatccaacaccgaatgtcaaatctacactatttcaagtgaacctttct-tgcgctcacttcatcttcgata 988  Q
    ||||| ||||||| | |||||||||||| ||||| ||||||||| | |||| |||||| || || ||||||||||||||||    
T  36844729 aattcaagtcaattcgacaccgaatgtccaatctgcactatttccattgaatctttctatgtgc-cacttcatcttcgata 36844808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 901 - 990
Target Start/End: Original strand, 35161118 - 35161208
Alignment:
Q  901 aaaggtataattcgagtcaatccaacaccgaatgtcaaatctacactatttcaagtgaacctttcttgcgc-tcacttcatcttcgatacg 990  Q
    ||||||||||||||| |||| |||||| || ||||||||||||||||||| ||| ||||| |||||||  | |||||||||||||||||||    
T  35161118 aaaggtataattcgaatcaacccaacaacggatgtcaaatctacactattccaaatgaacatttcttgtacgtcacttcatcttcgatacg 35161208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 541 - 676
Target Start/End: Original strand, 36844363 - 36844498
Alignment:
Q  541 acgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccacc 640  Q
    |||||||| |||||||| ||||   || || |||||||||  ||||| ||||||  ||| ||| ||||| ||| |||||||||||||||||||||||| |    
T  36844363 acgcagaacggaagcaaagattaggaagcattaaacctaagagataatcagacaaattgtaagtgacaaacctgtcaaataagggttttcggaatccagc 36844462  T
Q  641 agaattaagaaaagttatcgataattttattgaatg 676  Q
     ||||  || |||||| |||||||||||||| ||||    
T  36844463 ggaatagaggaaagttctcgataattttattaaatg 36844498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 572 - 676
Target Start/End: Original strand, 15385018 - 15385122
Alignment:
Q  572 taaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaagaaaagttatcgataattttatt 671  Q
    ||||| |||| |||||||||||| || |||||||||||  || | ||||||| |||| || ||||||  | |||| ||||||||| ||||||||||||||    
T  15385018 taaacttaaaagataaacagacaagtcgcaagcgacaaatctgttaaataagagtttccgaaatccattaaaattgagaaaagttctcgataattttatt 15385117  T
Q  672 gaatg 676  Q
    |||||    
T  15385118 gaatg 15385122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 675
Target Start/End: Original strand, 40778873 - 40778954
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaattaagaaaagttatcg-ataattttattgaat 675  Q
    |||||||||||||| ||||||||| |||||||||  |||||||||||||||| ||| ||  | ||| |||||||||||||||    
T  40778873 gttgcaagcgacaaacctatcaaaataagggtttctggaatccaccagaattgagagaaaatctcgaataattttattgaat 40778954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 676
Target Start/End: Complemental strand, 14504175 - 14504040
Alignment:
Q  541 acgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccacc 640  Q
    |||||||| ||||||||||| |  ||| |  |||||||| | ||||||   ||| ||||||||| |||| ||| ||||||||| |||| | |||||||||    
T  14504175 acgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaacctgtcaaataagagtttccagaatccacc 14504076  T
Q  641 agaattaagaaaagttatcgataattttattgaatg 676  Q
    | | |  ||||| | | |||||||||||||||||||    
T  14504075 aaagtggagaaaggatctcgataattttattgaatg 14504040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 5e-34; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 541 - 671
Target Start/End: Original strand, 22572421 - 22572551
Alignment:
Q  541 acgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccacc 640  Q
    |||||||| |||||||||||||  ||| | ||||||||||| |||||||||||| ||||||||||||||  ||||||||||||||||| ||||||||||     
T  22572421 acgcagaacggaagcaaggattagcaagcgctaaacctaaaagataaacagacaggttgcaagcgacaaatctatcaaataagggtttccggaatccaca 22572520  T
Q  641 agaattaagaaaagttatcgataattttatt 671  Q
    |||||| ||||||||| ||||| ||||||||    
T  22572521 agaattgagaaaagttctcgattattttatt 22572551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 550 - 676
Target Start/End: Complemental strand, 32053088 - 32052963
Alignment:
Q  550 ggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaag 649  Q
    ||||| |||||||  ||| | ||||||||||| ||||||||||||  |||||||||||||  || ||||| |||||||| || |||||||||||||| ||    
T  32053088 ggaagtaaggattagcaagcgctaaacctaaaagataaacagacaatttgcaagcgacaaatctgtcaaa-aagggtttccgaaatccaccagaattgag 32052990  T
Q  650 aaaagttatcgataattttattgaatg 676  Q
    ||||||| || ||||||||||||||||    
T  32052989 aaaagttttctataattttattgaatg 32052963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 571 - 646
Target Start/End: Original strand, 31577245 - 31577320
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt 646  Q
    ||||||||||| |||||||||| | |||||||||||||| |||||||||||||||||| || ||||||||||||||    
T  31577245 ctaaacctaaaagataaacagataggttgcaagcgacaaacctatcaaataagggtttccgaaatccaccagaatt 31577320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 832 - 1003
Target Start/End: Complemental strand, 16931318 - 16931145
Alignment:
Q  832 gaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttc-gaaaggtataattcgagtcaatccaacaccg 930  Q
    |||||||||||||||||| ||| ||||||  || ||||||||  | ||| |||||||| |||||||||  |||| ||||||||||| |||||| ||||||    
T  16931318 gaatgactaaattcacccatacgtcatggtgaagccatgtgtaatgctcatgaggtct-gggcttttcaaaaagttataattcgagccaatccgacaccg 16931220  T
Q  931 aatgtc-aaatctacactatttcaagtgaacctttcttgc--gctcacttcatcttcgatacgcgctgccaatttg 1003  Q
     ||| | |||||| ||||||| ||||||| | ||||||||  || ||||| ||||||||||||||| |||||||||    
T  16931219 gatgccaaaatctgcactattccaagtgagcatttcttgcatgc-cacttaatcttcgatacgcgccgccaatttg 16931145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 832 - 1003
Target Start/End: Complemental strand, 16936701 - 16936528
Alignment:
Q  832 gaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttc-gaaaggtataattcgagtcaatccaacaccg 930  Q
    |||||||||||||||||| ||| ||||||  || ||||||||  | ||| |||||||| |||||||||  |||| ||||||||||| |||||| ||||||    
T  16936701 gaatgactaaattcacccatacgtcatggtgaagccatgtgtaatgctcatgaggtct-gggcttttcaaaaagttataattcgagccaatccgacaccg 16936603  T
Q  931 aatgtc-aaatctacactatttcaagtgaacctttcttgc--gctcacttcatcttcgatacgcgctgccaatttg 1003  Q
     ||| | |||||| ||||||| ||||||| | ||||||||  || ||||| ||||||||||||||| |||||||||    
T  16936602 gatgccaaaatctgcactattccaagtgagcatttcttgcatgc-cacttaatcttcgatacgcgccgccaatttg 16936528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 571 - 675
Target Start/End: Complemental strand, 4303477 - 4303371
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcga-caatcctatcaaataagggttttcggaatccaccagaattaagaaaagttatcg-ataatttt 668  Q
    ||||||||||| |||||| ||||| ||||||||||| ||| ||||| ||||||||||||||||||||||| |||||| ||| ||  | ||| ||||||||    
T  4303477 ctaaacctaaaagataaagagacaggttgcaagcgaacaaacctattaaataagggttttcggaatccactagaattgagagaaaatctcgaataatttt 4303378  T
Q  669 attgaat 675  Q
    |||||||    
T  4303377 attgaat 4303371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 815 - 922
Target Start/End: Original strand, 5678510 - 5678618
Alignment:
Q  815 ggcctttagacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttt-tcgaaaggtataattc 913  Q
    |||||| ||||||||||| ||||||||| | | ||||||||||||||| |||||||  |||| ||||||||||  |||||||| |  |||||||||||||    
T  5678510 ggccttcagacgatctcggatgactaaaataatccctacatcatggcagatccatgatttttgctcgtgaggttaggggctttctgaaaaggtataattc 5678609  T
Q  914 gagtcaatc 922  Q
    | |||||||    
T  5678610 gggtcaatc 5678618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 815 - 922
Target Start/End: Original strand, 5703562 - 5703670
Alignment:
Q  815 ggcctttagacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttt-tcgaaaggtataattc 913  Q
    |||||| ||||||||||| ||||||||| | | ||||||||||||||| |||||||  |||| ||||||||||  |||||||| |  |||||||||||||    
T  5703562 ggccttcagacgatctcggatgactaaaataatccctacatcatggcagatccatgatttttgctcgtgaggttaggggctttctgaaaaggtataattc 5703661  T
Q  914 gagtcaatc 922  Q
    | |||||||    
T  5703662 gggtcaatc 5703670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 572 - 675
Target Start/End: Original strand, 32936824 - 32936926
Alignment:
Q  572 taaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaagaaaagttatcgataattttatt 671  Q
    |||||||||  | |||||| ||| ||||||||| ||||   | ||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||    
T  32936824 taaacctaagagctaaacaaacaagttgcaagcaacaaatatgtcaaataagggttttcggaatccaccataattgagaaaa-ttctcgataattttatt 32936922  T
Q  672 gaat 675  Q
    ||||    
T  32936923 gaat 32936926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 544 - 627
Target Start/End: Original strand, 5678248 - 5678331
Alignment:
Q  544 cagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggtt 627  Q
    ||||| |||||||||| ||  |||  ||||||| |||| |||||||||||| ||| |||||||||| |||||||||||||||||    
T  5678248 cagaatggaagcaagggttagcaagtactaaacttaaaagataaacagacaggttacaagcgacaaacctatcaaataagggtt 5678331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 544 - 627
Target Start/End: Original strand, 5703300 - 5703383
Alignment:
Q  544 cagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggtt 627  Q
    ||||| |||||||||| ||  |||  ||||||| |||| |||||||||||| ||| |||||||||| |||||||||||||||||    
T  5703300 cagaatggaagcaagggttagcaagtactaaacttaaaagataaacagacaggttacaagcgacaaacctatcaaataagggtt 5703383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 829 - 912
Target Start/End: Original strand, 31578165 - 31578249
Alignment:
Q  829 ctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcg-aaaggtataatt 912  Q
    ||||| |||||||||| || |||||||||||||||  ||||||||||| || ||||||||  ||||||| || ||||||||||||    
T  31578165 ctcgagtgactaaatttactcctacatcatggcaaggccatgtgttttgcttgtgaggtccagggctttccgaaaaggtataatt 31578249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 596 - 646
Target Start/End: Original strand, 13882773 - 13882824
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  13882773 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaatt 13882824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 572 - 650
Target Start/End: Original strand, 4668229 - 4668307
Alignment:
Q  572 taaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaaga 650  Q
    |||||||||| |||||||||| | | || ||||||||| ||||| |||||||||||| |  |||||||| |||||||||    
T  4668229 taaacctaaaagataaacagaaaggatgtaagcgacaaacctattaaataagggtttccataatccacctgaattaaga 4668307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 646
Target Start/End: Original strand, 859243 - 859294
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    |||||||||||||| ||||||||| ||| ||||| |||||||||||||||||    
T  859243 gttgcaagcgacaaacctatcaaaataaaggtttccggaatccaccagaatt 859294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 646
Target Start/End: Original strand, 1217247 - 1217298
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    |||||||||||||| ||||||||| ||| ||||| |||||||||||||||||    
T  1217247 gttgcaagcgacaaacctatcaaaataaaggtttccggaatccaccagaatt 1217298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 8e-33; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 538 - 674
Target Start/End: Complemental strand, 15081630 - 15081494
Alignment:
Q  538 ttaacgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatcc 637  Q
    ||||||||||| ||||||||||||| |||||| |||||| |||  |||||||| ||| |||||||||||||| ||| |||||||| ||||| | ||||||    
T  15081630 ttaacgcagaacggaagcaaggattaacaaacgctaaacataagagataaacacacaagttgcaagcgacaaacctgtcaaataaaggtttccagaatcc 15081531  T
Q  638 accagaattaagaaaagttatcgataattttattgaa 674  Q
    || |||||| ||||||||| |||||||||||||||||    
T  15081530 acaagaattgagaaaagttctcgataattttattgaa 15081494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 541 - 676
Target Start/End: Complemental strand, 9295390 - 9295255
Alignment:
Q  541 acgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccacc 640  Q
    |||||||| | |||||||||||||||| | ||||| ||||  |||||||||||| ||||||||||||||  || ||||||| | ||||  ||||||||||    
T  9295390 acgcagaacgaaagcaaggattgacaagcgctaaatctaagagataaacagacaagttgcaagcgacaaatctgtcaaatatgagtttctggaatccacc 9295291  T
Q  641 agaattaagaaaagttatcgataattttattgaatg 676  Q
    |||||| ||||||||| |||||||||||||||||||    
T  9295290 agaattgagaaaagttctcgataattttattgaatg 9295255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 571 - 676
Target Start/End: Complemental strand, 12310888 - 12310783
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaagaaaagttatcgataattttat 670  Q
    ||||||||||| |||||||||||| ||||  |||||||| ||||| ||| ||||||||||||| ||||||| | ||||||||||||||||||| ||||||    
T  12310888 ctaaacctaaaagataaacagacaagttgtgagcgacaaacctataaaaaaagggttttcggagtccaccaaatttaagaaaagttatcgatatttttat 12310789  T
Q  671 tgaatg 676  Q
    ||||||    
T  12310788 tgaatg 12310783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 571 - 675
Target Start/End: Original strand, 18180745 - 18180851
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatc-aaataagggttttcggaatccaccagaattaagaaaagttatcg-ataatttt 668  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| | ||||||||||||||| ||| ||  | ||| ||||||||    
T  18180745 ctaaacctaaaggataaactgacatgttgcaagcgacaaacctatcaaaataagggtttccagaatccaccagaattgagagaaaatctcgaataatttt 18180844  T
Q  669 attgaat 675  Q
    |||||||    
T  18180845 attgaat 18180851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 577 - 676
Target Start/End: Original strand, 38082155 - 38082255
Alignment:
Q  577 ctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaagaaaagttatcgataa-ttttattgaat 675  Q
    ||||| |||||||||| | |||||||||||||| | ||||||||||||||||  |||||| | ||||||| ||||||||| ||||||| |||||||||||    
T  38082155 ctaaaagataaacagagaggttgcaagcgacaaacatatcaaataagggtttcaggaatctatcagaattgagaaaagttctcgataatttttattgaat 38082254  T
Q  676 g 676  Q
    |    
T  38082255 g 38082255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 878 - 987
Target Start/End: Complemental strand, 10404773 - 10404663
Alignment:
Q  878 ctcgtgaggtctggggcttttcgaaa-ggtataattcgagtcaatccaacaccgaatgtcaaatctacactatttcaagtgaacctttcttgcgc-tcac 975  Q
    ||||||||||| ||||||||| |||| |||||||||||||||| ||| |||||| ||| ||||| | ||||||| ||| ||||||||||||| || ||||    
T  10404773 ctcgtgaggtcgggggctttttgaaaaggtataattcgagtcactccgacaccgtatgccaaatttgcactattccaa-tgaacctttcttgtgcgtcac 10404675  T
Q  976 ttcatcttcgat 987  Q
    ||||||||||||    
T  10404674 ttcatcttcgat 10404663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 833 - 930
Target Start/End: Complemental strand, 15081343 - 15081245
Alignment:
Q  833 aatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcg-aaaggtataattcgagtcaatccaacaccg 930  Q
    |||| |||||||||||||| |||||||||| | | ||||||| | |||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||    
T  15081343 aatggctaaattcacccctgcatcatggcagagcaatgtgttatgctcgtgagctctagagcttttcgaaaaggtataattcgagtcaatccgacaccg 15081245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 573 - 676
Target Start/End: Complemental strand, 2262769 - 2262666
Alignment:
Q  573 aaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaagaaaagttatcgataattttattg 672  Q
    |||| |||| |||||||| ||| |||||||||||||| | | | |||||||||||||||||||| || | |||| ||||||||| || || |||||||||    
T  2262769 aaacttaaaagataaacaaacaagttgcaagcgacaaacttgtaaaataagggttttcggaatctactaaaattgagaaaagttctccatgattttattg 2262670  T
Q  673 aatg 676  Q
    ||||    
T  2262669 aatg 2262666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 550 - 676
Target Start/End: Original strand, 10456238 - 10456364
Alignment:
Q  550 ggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaag 649  Q
    |||||||||||||  ||| | ||||| ||||| |||||| ||| | |||||||||||||| ||| ||||| |||||||| |  |||||||||   || ||    
T  10456238 ggaagcaaggattagcaagctctaaatctaaaagataaatagataagttgcaagcgacaaacctgtcaaaaaagggtttccaaaatccaccaatgttgag 10456337  T
Q  650 aaaagttatcgataattttattgaatg 676  Q
    |||||||  |||||| |||||||||||    
T  10456338 aaaagttcccgataactttattgaatg 10456364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 596 - 675
Target Start/End: Original strand, 22921937 - 22922018
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaattaagaaaagttatcg-ataattttattgaat 675  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||| ||  | ||| |||||||||||||||    
T  22921937 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaat 22922018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 815 - 934
Target Start/End: Complemental strand, 26150466 - 26150346
Alignment:
Q  815 ggcctttagacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcg-aaaggtataattc 913  Q
    |||||| |||||| |||||||||||||| | |||| |||||||||||||| | |||  |||| |||||||| || || ||||| || ||| ||||||| |    
T  26150466 ggccttcagacgacctcgaatgactaaaataacccatacatcatggcaaagcgatgatttttgctcgtgagatccggagctttccgaaaaagtataatcc 26150367  T
Q  914 gagtcaatccaacaccgaatg 934  Q
      ||||||| |||||||||||    
T  26150366 aggtcaatcaaacaccgaatg 26150346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 596 - 646
Target Start/End: Original strand, 42891751 - 42891802
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  42891751 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaatt 42891802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 905 - 998
Target Start/End: Original strand, 38082464 - 38082558
Alignment:
Q  905 gtataattcgagtcaatccaacaccgaatgtcaaatctacactatttcaagtgaacctttcttgcgc-tcacttcatcttcgatacgcgctgcca 998  Q
    ||||||||||||||| ||| |||||| ||| ||||||| |||||||   || ||  ||||||||||| |||||||||||||||||| | ||||||    
T  38082464 gtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatcttcgatacacactgcca 38082558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 905 - 1003
Target Start/End: Complemental strand, 16848422 - 16848323
Alignment:
Q  905 gtataattcgagtcaatccaacaccgaatgtcaaatctacactatttcaagtgaacctttctt--gcgctcacttcatcttcgatacgcgctgccaattt 1002  Q
    |||||||||  |||||||| ||| || ||||||||||| |||||||  ||||||  |||||||  |||| ||||||||||||||||||||| |||| |||    
T  16848422 gtataattcaggtcaatccgacatcggatgtcaaatctgcactattctaagtgagtctttcttatgcgc-cacttcatcttcgatacgcgccgccagttt 16848324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 675
Target Start/End: Original strand, 22520886 - 22520967
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaattaagaaaagttatcg-ataattttattgaat 675  Q
    |||||||| ||||| ||||||||| ||||||||| ||||||||||||||||| ||| ||  | ||| |||||||||||||||    
T  22520886 gttgcaagtgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaat 22520967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 646
Target Start/End: Original strand, 22926735 - 22926786
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    |||||||||||||| ||||||||| |||||||||  ||||||||||||||||    
T  22926735 gttgcaagcgacaaacctatcaaaataagggtttctggaatccaccagaatt 22926786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 675
Target Start/End: Original strand, 22512133 - 22512214
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaattaagaaaagttatcg-ataattttattgaat 675  Q
    |||||||| ||||| ||||||||| ||||||||| || |||||||||||||| ||| ||  | ||| |||||||||||||||    
T  22512133 gttgcaagtgacaaacctatcaaaataagggtttccgaaatccaccagaattgagagaaaatctcgaataattttattgaat 22512214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 5e-31; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 551 - 676
Target Start/End: Complemental strand, 5841350 - 5841225
Alignment:
Q  551 gaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaaga 650  Q
    ||||||| ||||  ||||| ||||||||||| |||||||| ||| |||||||||||||| ||| ||||| | ||||||||||||||||| |||||| |||    
T  5841350 gaagcaaagattagcaaacgctaaacctaaaagataaacatacaagttgcaagcgacaaacctgtcaaacaggggttttcggaatccacaagaattgaga 5841251  T
Q  651 aaagttatcgataattttattgaatg 676  Q
    |||||| |||||||||||||||||||    
T  5841250 aaagttctcgataattttattgaatg 5841225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 550 - 646
Target Start/End: Original strand, 44675263 - 44675359
Alignment:
Q  550 ggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt 646  Q
    |||||||||| ||  ||||| | |||| |||| |||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  44675263 ggaagcaagggttagcaaacgccaaacataaaagataaacagacaggttgcaagcgacatacctatcaaataagggttttcggaatccaccagaatt 44675359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 571 - 646
Target Start/End: Complemental strand, 8781539 - 8781465
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt 646  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  8781539 ctaaacctaaaagataaacagacaggttgcaagcgacaaacctatcaaataaggg-tttcgaaatccaccagaatt 8781465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 541 - 676
Target Start/End: Original strand, 18725626 - 18725763
Alignment:
Q  541 acgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccacc 640  Q
    |||||||| |||||||||| || |||||| |||||| |||| |||||||||||| | |||||||||||| |||||||||||| |||||  ||| |||||     
T  18725626 acgcagaacggaagcaagggttaacaaacgctaaacttaaaagataaacagacaggctgcaagcgacaaacctatcaaataaaggtttctggattccact 18725725  T
Q  641 agaatta--agaaaagttatcgataattttattgaatg 676  Q
    | |||||  |||||||||    ||||||||||||||||    
T  18725726 aaaattaagagaaaagtttcaaataattttattgaatg 18725763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 806 - 903
Target Start/End: Original strand, 18725890 - 18725987
Alignment:
Q  806 gcggttttaggcctttagacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcgaaa 903  Q
    |||||||  |||||| |||||||||||||| |||||||| ||| || |||||||||||| | ||| || || ||||||| ||| |||||||| |||||    
T  18725890 gcggtttcgggccttcagacgatctcgaattactaaattaacctctgcatcatggcaaagcgatgagtattgctcgtgaagtccggggctttccgaaa 18725987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 597 - 646
Target Start/End: Complemental strand, 2155968 - 2155918
Alignment:
Q  597 ttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| |||||||    
T  2155968 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatcagaatt 2155918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 675
Target Start/End: Original strand, 27956241 - 27956322
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaattaagaaaagttatcg-ataattttattgaat 675  Q
    |||||||||||||| ||||| ||| ||||||||| ||||||||||||||||| ||| ||  | ||| |||||||||||||||    
T  27956241 gttgcaagcgacaaacctatgaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaat 27956322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 646
Target Start/End: Complemental strand, 22011438 - 22011387
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    |||| ||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  22011438 gttggaagcgacaaacctatcaaaataagggtttccggaatccaccagaatt 22011387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 675
Target Start/End: Original strand, 27952405 - 27952486
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaattaagaaaagttatcg-ataattttattgaat 675  Q
    |||||||||||||| ||| | ||| ||||||||| ||||||||||||||||| ||| ||  | ||| |||||||||||||||    
T  27952405 gttgcaagcgacaaacctttgaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaat 27952486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 644
Target Start/End: Complemental strand, 33655630 - 33655581
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaa 644  Q
    ||||||| |||||| ||||||||| ||||||||| |||||||||||||||    
T  33655630 gttgcaaacgacaaacctatcaaaataagggtttccggaatccaccagaa 33655581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 8e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 541 - 675
Target Start/End: Original strand, 25340115 - 25340250
Alignment:
Q  541 acgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccacc 640  Q
    ||||| |||||||||||||||| ||||||  |||||||||| |||||||||||| |||||| || |||| ||||||||||||||||||  |||||||| |    
T  25340115 acgcataaaggaagcaaggattaacaaacgttaaacctaaaagataaacagacaggttgcacgcaacaaacctatcaaataagggtttctggaatccatc 25340214  T
Q  641 agaattaagaaaagttatcgat-aattttattgaat 675  Q
    | |||| ||||||||| ||||| |||||||||||||    
T  25340215 ataattgagaaaagttgtcgataaattttattgaat 25340250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 543 - 653
Target Start/End: Original strand, 20398434 - 20398544
Alignment:
Q  543 gcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccag 642  Q
    |||||| ||||||||| |||  ||| | ||||||||||| ||||| |||||| ||||||||||||||  |||||||||||||||||||||||||||||||    
T  20398434 gcagaacggaagcaagaattagcaagcgctaaacctaaaagataatcagacaggttgcaagcgacaagtctatcaaataagggttttcggaatccaccag 20398533  T
Q  643 aattaagaaaa 653  Q
    |||| ||||||    
T  20398534 aattgagaaaa 20398544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 571 - 676
Target Start/End: Complemental strand, 4580589 - 4580483
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaaga-aaagttatcgataatttta 669  Q
    ||||||||||| |||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||| |||||| ||| ||| || ||||  ||||||    
T  4580589 ctaaacctaaaagataaacacacaggttgcaagcgacaaacctatcaaataagggttttcagaatccactagaattgagagaaaattctcgaatatttta 4580490  T
Q  670 ttgaatg 676  Q
    |||||||    
T  4580489 ttgaatg 4580483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 571 - 646
Target Start/End: Complemental strand, 19950029 - 19949954
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt 646  Q
    ||||||||||| |||||||||| | |||||||||||||| | ||||||||||||||||| |||||||| |||||||    
T  19950029 ctaaacctaaaagataaacagataagttgcaagcgacaaacttatcaaataagggtttttggaatccatcagaatt 19949954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 831 - 991
Target Start/End: Original strand, 25340400 - 25340562
Alignment:
Q  831 cgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcg-aaaggtataattcgagtcaatccaacacc 929  Q
    |||||||||||||| | |||||| ||||||||||   ||| ||| | |||||||||||||||||||| || ||||||||| ||||||||| ||||||| |    
T  25340400 cgaatgactaaatttatccctacgtcatggcaaagtaatgggttatgctcgtgaggtctggggctttccgaaaaggtatatttcgagtcattccaacatc 25340499  T
Q  930 gaatgtcaaatctacactatttcaagtgaacctttcttgcg-ctcacttcatcttcgatacgc 991  Q
    | ||| ||||| | | ||||||| ||| | |||||||| ||   ||||||||||| |||||||    
T  25340500 ggatgccaaatatgcgctatttcgagttagcctttcttacgtgccacttcatcttggatacgc 25340562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 832 - 987
Target Start/End: Original strand, 33620328 - 33620485
Alignment:
Q  832 gaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcgaaagg-tataattcgagtcaatccaacaccg 930  Q
    |||||| |||| | ||||||||||||||| | | |||||  |||| || |||||||| || ||||| ||||| | ||||||||| |||| ||| ||||||    
T  33620328 gaatgattaaaataacccctacatcatggaagagccatgaattttgcttgtgaggtccggagctttccgaaaagatataattcgggtcattccgacaccg 33620427  T
Q  931 aatgtcaaatctacactatttcaagtgaacctttcttgcgc-tcacttcatcttcgat 987  Q
     |||| |||| ||||| ||| | |||||||||||||||||| ||||||| ||||||||    
T  33620428 gatgtaaaatatacaccattccgagtgaacctttcttgcgcgtcacttcgtcttcgat 33620485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 586 - 646
Target Start/End: Original strand, 40593520 - 40593580
Alignment:
Q  586 aaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt 646  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  40593520 aaacagacgggttgcaagcgacaaacctatcaaataagggttttcggaatccaccaaaatt 40593580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 806 - 888
Target Start/End: Complemental strand, 25857517 - 25857435
Alignment:
Q  806 gcggttttaggcctttagacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtc 888  Q
    |||||||  ||||||||||||| |||||||||||||| | |||||||| ||||||| || | ||||||||| |||||||||||    
T  25857517 gcggtttcgggcctttagacgacctcgaatgactaaaataacccctacgtcatggcgaagcgatgtgttttgctcgtgaggtc 25857435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 541 - 675
Target Start/End: Original strand, 33620041 - 33620174
Alignment:
Q  541 acgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccacc 640  Q
    ||||| || |||||||||||||  ||||| |||||||||||  |||||||||||   ||||||||  || |||||||||||||||||| | |||||| ||    
T  33620041 acgcaaaacggaagcaaggattagcaaactctaaacctaaa--ataaacagacaatctgcaagcgcaaaacctatcaaataagggtttccagaatcctcc 33620138  T
Q  641 agaattaaga-aaagttatcgataattttattgaat 675  Q
    |||||| ||| |||  | |||||| |||||||||||    
T  33620139 agaattgagagaaaaatctcgatatttttattgaat 33620174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 578 - 655
Target Start/End: Complemental strand, 1151221 - 1151145
Alignment:
Q  578 taaaggataaacagacatgtt-gcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaagaaaagt 655  Q
    |||| |||||||||||| ||| |||||| |||| |||||||||  ||||||||||||||||||||||||| ||||||||    
T  1151221 taaaagataaacagacaagtttgcaagcaacaaacctatcaaa--agggttttcggaatccaccagaattgagaaaagt 1151145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 571 - 646
Target Start/End: Complemental strand, 41218830 - 41218755
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt 646  Q
    ||||| ||||| |||||| ||| | |||| ||||||||| |||||||||||||| ||| |||||||||||||||||    
T  41218830 ctaaatctaaaagataaatagataggttgtaagcgacaaacctatcaaataaggctttccggaatccaccagaatt 41218755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 596 - 675
Target Start/End: Complemental strand, 5128911 - 5128830
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaattaagaaaagttatcg-ataattttattgaat 675  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||| ||  | ||| |||||||||||||||    
T  5128911 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaat 5128830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 908 - 988
Target Start/End: Original strand, 27484707 - 27484788
Alignment:
Q  908 taattcgagtcaatccaacaccgaatgtcaaatctacactatttcaagtgaacctttcttgcgc-tcacttcatcttcgata 988  Q
    ||||||||||| |||  |||||  ||||||||||||||||||||||||| ||||||||||| ||  ||||| ||||||||||    
T  27484707 taattcgagtcgatctgacaccagatgtcaaatctacactatttcaagttaacctttcttgtgcgccactttatcttcgata 27484788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 541 - 676
Target Start/End: Original strand, 1697033 - 1697168
Alignment:
Q  541 acgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccacc 640  Q
    ||||||||  ||||||||||||  ||||| |||||| | || |||||| ||||| |||||||||||||| ||||||| ||| | ||||   ||||||||     
T  1697033 acgcagaacagaagcaaggattatcaaacgctaaacatgaaagataaatagacaggttgcaagcgacaaacctatcatatatgagtttctagaatccact 1697132  T
Q  641 agaa-ttaagaaaagttatcgataattttattgaatg 676  Q
    |||| || ||||||| | | |||||||||||||||||    
T  1697133 agaatttgagaaaag-tcttgataattttattgaatg 1697168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 596 - 646
Target Start/End: Original strand, 3063824 - 3063875
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  3063824 gttgcaagcgacaaacctatcaaaataagggttttcggaatcaaccagaatt 3063875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 912
Target Start/End: Original strand, 39913535 - 39913632
Alignment:
Q  816 gcctttagacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcg-aaaggtataatt 912  Q
    ||||| |||||| |||||||||||||| | | || | ||||||||||||   ||||||||| |||||||||||||  ||||| || ||||||||||||    
T  39913535 gccttcagacgacctcgaatgactaaaataaaccattcatcatggcaaagtgatgtgttttgctcgtgaggtctgacgctttccgaaaaggtataatt 39913632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 599 - 646
Target Start/End: Complemental strand, 53013025 - 53012977
Alignment:
Q  599 gcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    ||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  53013025 gcaagcgacaaacctatcaaaataagggtttccggaatccaccagaatt 53012977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 646
Target Start/End: Original strand, 3068962 - 3069013
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||||| ||||    
T  3068962 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccaaaatt 3069013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 646
Target Start/End: Original strand, 43306759 - 43306810
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    |||||||||||||| ||||||||| ||||||||| || ||||||||||||||    
T  43306759 gttgcaagcgacaaacctatcaaaataagggtttccgtaatccaccagaatt 43306810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 3e-26; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 551 - 676
Target Start/End: Original strand, 8568633 - 8568757
Alignment:
Q  551 gaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaaga 650  Q
    ||||||||||||  ||||| ||||||||||| |||||||||||| ||||||||| |||| ||| ||||| ||  ||||||||||||||| ||||||||||    
T  8568633 gaagcaaggattagcaaacgctaaacctaaaagataaacagacaagttgcaagctacaaacctgtcaaaaaaaagttttcggaatccactagaattaaga 8568732  T
Q  651 aaagttatcgataattttattgaatg 676  Q
    |||| | | |||||||||||||||||    
T  8568733 aaag-tctagataattttattgaatg 8568757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 550 - 675
Target Start/End: Complemental strand, 11190545 - 11190420
Alignment:
Q  550 ggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaag 649  Q
    |||||||||| ||  |||||||||||||||||  ||||| ||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||| ||    
T  11190545 ggaagcaagggttagcaaacactaaacctaaaatataaagagacaggttgcaagcgacaaacctatcaaataa-ggtttccggaatccaccagaattgag 11190447  T
Q  650 aaaagttatcg-ataattttattgaat 675  Q
    | ||  | ||| |||||||||||||||    
T  11190446 agaaaatctcgaataattttattgaat 11190420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 565 - 676
Target Start/End: Original strand, 27142533 - 27142644
Alignment:
Q  565 caaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaagaaaagttatcgataa 664  Q
    ||||| ||||||||||  |||||| ||||| |||||||||||||| ||  |||| ||||||| |  ||||||||||| |||| ||||||||| |||||||    
T  27142533 caaacgctaaacctaagagataaatagacaagttgcaagcgacaaaccagtcaattaagggtatctggaatccaccataattgagaaaagttttcgataa 27142632  T
Q  665 ttttattgaatg 676  Q
    ||||||||||||    
T  27142633 ttttattgaatg 27142644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 584 - 646
Target Start/End: Original strand, 2939768 - 2939829
Alignment:
Q  584 ataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt 646  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| ||||    
T  2939768 ataaacagacatgttgcaagcgacaaacctatcaaataa-ggttttcgaaatccaccataatt 2939829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 829 - 988
Target Start/End: Original strand, 19474944 - 19475105
Alignment:
Q  829 ctcgaatgactaaattcacccctacatcatg--gcaaatccatgtgttttactcgtgaggtctggggcttttcgaaag-gtataattcgagtcaatccaa 925  Q
    ||||||||||||||||||| ||||| |||||  ||| ||  ||  ||||| ||||||||||| |||| ||| | |||  ||||||||||||||| ||| |    
T  19474944 ctcgaatgactaaattcactcctacgtcatgatgcagat--ataagttttgctcgtgaggtccggggatttccaaaaatgtataattcgagtcattccga 19475041  T
Q  926 caccgaatgtcaaatctacactatttcaagtgaacctttcttgcgct-cacttcatcttcgata 988  Q
    ||||| ||| ||||||| |||||||   ||||||||||| ||||||| | ||||||||||||||    
T  19475042 caccggatgccaaatctgcactattctgagtgaaccttttttgcgctccgcttcatcttcgata 19475105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 822 - 1004
Target Start/End: Original strand, 2339364 - 2339548
Alignment:
Q  822 agacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcg-aaaggtataattcgagtcaa 920  Q
    |||||| |||||||||||||| | | ||||||||| ||||||||||| |  |||| |||||||| | || |||||| || |||||||||||||| ||||     
T  2339364 agacgacctcgaatgactaaaataagccctacatcttggcaaatccaagaattttgctcgtgagatatgaggctttccgaaaaggtataattcgggtcat 2339463  T
Q  921 tccaacaccgaatgtcaaatctacactatttcaagtgaacctttcttgcg-ctcacttcatcttcgatacgcgctgccaatttgt 1004  Q
    ||  ||| || ||   |||||||||| ||||||||||| | ||||||| |   |||||||||||| ||| |||| |||| |||||    
T  2339464 tctgacatcggatacaaaatctacaccatttcaagtgagcatttcttgtgagccacttcatcttcaatatgcgccgccagtttgt 2339548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 571 - 676
Target Start/End: Original strand, 2339114 - 2339217
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaaga-aaagttatcgataatttta 669  Q
    |||||||||||  ||||||||||| | ||||||| ||||  ||||||||||||||||| || |||||||||||||| ||| |||  | ||||||||||||    
T  2339114 ctaaacctaaa--ataaacagacaggctgcaagc-acaaatctatcaaataagggtttccgaaatccaccagaattgagagaaaagtctcgataatttta 2339210  T
Q  670 ttgaatg 676  Q
    |||||||    
T  2339211 ttgaatg 2339217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 571 - 676
Target Start/End: Complemental strand, 26571176 - 26571070
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaagaaaagttatcg-ataatttta 669  Q
    |||||| |||| |||||| ||||| ||||||||||||||  |||| ||||| ||||||||||||||| | |||||| ||| ||  | ||| |||||||||    
T  26571176 ctaaacttaaaagataaatagacaggttgcaagcgacaaatctattaaataggggttttcggaatccgctagaattgagagaaaatctcgaataatttta 26571077  T
Q  670 ttgaatg 676  Q
    |||||||    
T  26571076 ttgaatg 26571070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 806 - 914
Target Start/End: Original strand, 2939987 - 2940096
Alignment:
Q  806 gcggttttaggcctttagacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttc-gaaag 904  Q
    |||||||  |||||| |||||| ||||| |||||||| | ||||||||||||||||||| | ||| | ||| ||||||||||  |||||||| |  ||||    
T  2939987 gcggtttcgggccttcagacgacctcgactgactaaaataacccctacatcatggcaaagcgatgagctttgctcgtgaggttcggggctttccaaaaag 2940086  T
Q  905 gtataattcg 914  Q
    ||||||||||    
T  2940087 gtataattcg 2940096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 541 - 646
Target Start/End: Original strand, 13645842 - 13645947
Alignment:
Q  541 acgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccacc 640  Q
    |||||||| |||||||||| ||  ||| | || | |||||| ||||||||||||  |||||||| |||| ||||| |||||||||||| ||||||| | |    
T  13645842 acgcagaatggaagcaagggttagcaagcgcttagcctaaaagataaacagacagattgcaagcaacaaacctattaaataagggtttccggaatctaac 13645941  T
Q  641 agaatt 646  Q
    ||||||    
T  13645942 agaatt 13645947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 815 - 899
Target Start/End: Complemental strand, 3565520 - 3565436
Alignment:
Q  815 ggcctttagacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttc 899  Q
    |||||| |||||| ||||||||| |||||| || ||||||||||| |||| | ||| || || ||||||||||| ||||||||||    
T  3565520 ggccttcagacgacctcgaatgattaaattaactcctacatcatgacaaagcgatgagtattgctcgtgaggtccggggcttttc 3565436  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 571 - 646
Target Start/End: Original strand, 19474685 - 19474760
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt 646  Q
    ||||| ||||| |||||||| | | |||||||| ||||| ||||| ||||||||||||||| ||||||| ||||||    
T  19474685 ctaaagctaaaagataaacatataggttgcaagagacaaacctattaaataagggttttcgaaatccactagaatt 19474760  T

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Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 838 - 986
Target Start/End: Original strand, 5038729 - 5038879
Alignment:
Q  838 ctaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcg-aaaggtataattcgagtcaatccaacaccgaatgtc 936  Q
    |||||||||||||||| ||||||| || | |||| || | || ||||| ||| |||||||||| |||||||||| || ||||||||  | |||| ||  |    
T  5038729 ctaaattcacccctacgtcatggcgaagcaatgtattatgctagtgagctctagggcttttcgaaaaggtataactcaagtcaatctgataccggatacc 5038828  T
Q  937 aaatctacactatttcaagtgaacctttcttgcgctc-acttcatcttcga 986  Q
    |||||| ||||||| ||| |||  ||||||||||  | |||||||||||||    
T  5038829 aaatctgcactattccaaatgagtctttcttgcgtgctacttcatcttcga 5038879  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 829 - 970
Target Start/End: Original strand, 13394500 - 13394642
Alignment:
Q  829 ctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcg-aaaggtataattcgagtcaatccaaca 927  Q
    |||||||||||||| | |||||||| ||||||| || | ||||||||   |||||| |||| ||||||| || |||||||||||| |  ||||||  |||    
T  13394500 ctcgaatgactaaactaacccctacgtcatggcgaagcaatgtgtttagatcgtgaagtcttgggctttccgaaaaggtataatttggatcaatcagaca 13394599  T
Q  928 ccgaatgtcaaatctacactatttcaagtgaacctttcttgcg 970  Q
    |||||||  |||| | ||| ||||  | |||||||||||||||    
T  13394600 ccgaatgaaaaatatgcaccattttgactgaacctttcttgcg 13394642  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 816 - 913
Target Start/End: Complemental strand, 19232108 - 19232010
Alignment:
Q  816 gcctttagacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttc-gaaaggtataattc 913  Q
    ||||| |||||| |||||||||||||| | |||| |   ||||||||||   ||| ||||| |||||||||||||||||||| |  |||||||||||||    
T  19232108 gccttcagacgacctcgaatgactaaaataacccatgtgtcatggcaaagtgatgagtttttctcgtgaggtctggggctttccaaaaaggtataattc 19232010  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 937 - 993
Target Start/End: Complemental strand, 10779572 - 10779515
Alignment:
Q  937 aaatctacactatttcaagtgaacctttcttgcgc-tcacttcatcttcgatacgcgc 993  Q
    |||||| ||| |||| |||||||||||||||||||  |||||||||||| ||||||||    
T  10779572 aaatctgcaccattttaagtgaacctttcttgcgcgccacttcatcttcaatacgcgc 10779515  T

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Target: scaffold0251 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 551 - 653
Target Start/End: Original strand, 8198 - 8300
Alignment:
Q  551 gaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaaga 650  Q
    ||||||||||||  ||| | ||||||||| | |||||||||||| |||||||||||||| ||| ||||||||||||||  |||||||| ||||||| |||    
T  8198 gaagcaaggattatcaagctctaaacctagaagataaacagacaagttgcaagcgacaaacctgtcaaataagggtttctggaatccatcagaattgaga 8297  T
Q  651 aaa 653  Q
    |||    
T  8298 aaa 8300  T

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Target: scaffold0251; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 901 - 998
Target Start/End: Original strand, 8495 - 8593
Alignment:
Q  901 aaaggtataattcgagtcaatccaacaccgaatgtcaaatctacactatttcaagtgaacctttcttgc-gctcacttcatcttcgatacgcgctgcca 998  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||  ||||||  ||||||| |   |||||||||||||||||||||| ||||    
T  8495 aaaggtataattcgagtcaatctaacaccgaatgtcaaatctgcactattctaagtgagtctttcttacatgtcacttcatcttcgatacgcgccgcca 8593  T

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Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 551 - 676
Target Start/End: Complemental strand, 11923936 - 11923812
Alignment:
Q  551 gaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaaga 650  Q
    ||||||||||||  |||||  |||||||||| ||||||||||||  ||| |||| |||| ||| ||||| || |||||||| ||||||| ||||||||||    
T  11923936 gaagcaaggattagcaaacgttaaacctaaaagataaacagacaatttgtaagctacaaacctgtcaaaaaaaggttttcgtaatccactagaattaaga 11923837  T
Q  651 aaagttatcgataattttattgaatg 676  Q
    |||| | | |||||||||||||||||    
T  11923836 aaag-tctagataattttattgaatg 11923812  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 541 - 638
Target Start/End: Original strand, 42071354 - 42071451
Alignment:
Q  541 acgcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatcca 638  Q
    |||||||| |||||||||| || |||| | ||||||||||| |||||||||||||||| |||| ||||| ||||||||||||| ||||  ||||||||    
T  42071354 acgcagaacggaagcaagggttaacaagcgctaaacctaaaagataaacagacatgttacaagtgacaaacctatcaaataagcgtttctggaatcca 42071451  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 822 - 933
Target Start/End: Complemental strand, 42646454 - 42646342
Alignment:
Q  822 agacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcg-aaaggtataattcgagtcaa 920  Q
    |||||| |||||||||||||||||||||||||| |||| ||||   | | ||||| |||||||| ||||| ||||| || |||||||||||||||||||     
T  42646454 agacgacctcgaatgactaaattcacccctacaacatgacaaagaaaggagttttgctcgtgagatctggtgctttccgaaaaggtataattcgagtcat 42646355  T
Q  921 tccaacaccgaat 933  Q
    ||| |||||||||    
T  42646354 tccgacaccgaat 42646342  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 806 - 903
Target Start/End: Original strand, 42071617 - 42071714
Alignment:
Q  806 gcggttttaggcctttagacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcgaaa 903  Q
    |||||||  |||||| |||||| |||||||||||||| | ||||||||||||||||||| | ||| ||||| |||| |||||| ||| ||||||||||    
T  42071617 gcggtttcgggccttcagacgacctcgaatgactaaaataacccctacatcatggcaaagcgatgagttttgctcgcgaggtccgggacttttcgaaa 42071714  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 619 - 676
Target Start/End: Original strand, 50005237 - 50005294
Alignment:
Q  619 ataagggttttcggaatccaccagaattaagaaaagttatcgataattttattgaatg 676  Q
    |||||||||||||||||||| || |||| ||||||||| |||||||||||||||||||    
T  50005237 ataagggttttcggaatccatcaaaattgagaaaagttctcgataattttattgaatg 50005294  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 901 - 998
Target Start/End: Original strand, 50005473 - 50005571
Alignment:
Q  901 aaaggtataattcgagtcaatccaacaccgaatgtcaaatctacactatttcaagtgaacctttcttgcgc-tcacttcatcttcgatacgcgctgcca 998  Q
    ||||||||||||||||||||||  ||| || || |||||||| |||||||||||||||  | |||||||||  ||| ||||||||||||| ||| ||||    
T  50005473 aaaggtataattcgagtcaatctgacatcggatatcaaatctgcactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacacgccgcca 50005571  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 586 - 674
Target Start/End: Original strand, 12486303 - 12486392
Alignment:
Q  586 aaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaagaaaagttatcg-ataattttattgaa 674  Q
    ||||||| || |||||||| |||| ||||| ||||||||||||||||||||||||| |||| ||| ||  | ||| ||||||||||||||    
T  12486303 aaacagatatattgcaagcaacaaacctattaaataagggttttcggaatccaccaaaattgagagaaaatctcgaataattttattgaa 12486392  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 543 - 676
Target Start/End: Original strand, 28260189 - 28260321
Alignment:
Q  543 gcagaaaggaagcaaggattgacaaacactaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccag 642  Q
    |||||| |||||||||||||   || ||||| | ||||| |||||| | ||| |||| ||||||||| ||  |||||  ||| |||||||||||||| ||    
T  28260189 gcagaacggaagcaaggattagtaagcactacatctaaaagataaataaacaagttgaaagcgacaaacccgtcaaaagagg-ttttcggaatccactag 28260287  T
Q  643 aattaagaaaagttatcgataattttattgaatg 676  Q
    |||| | ||||||| |||||| ||||||||||||    
T  28260288 aattgaaaaaagttctcgatatttttattgaatg 28260321  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 571 - 676
Target Start/End: Complemental strand, 45085773 - 45085666
Alignment:
Q  571 ctaaacctaaaggataaacagacatgttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt--aagaaaagttatcgataatttt 668  Q
    ||||||||||| |||||||||||| ||||||||||||||   |    |||||| ||||||| ||||||||||||||   ||||||||| || |||| |||    
T  45085773 ctaaacctaaaagataaacagacaagttgcaagcgacaaatattgacaataagagttttcgaaatccaccagaattgagagaaaagttctcaataagttt 45085674  T
Q  669 attgaatg 676  Q
    ||||||||    
T  45085673 attgaatg 45085666  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 596 - 646
Target Start/End: Original strand, 50857531 - 50857582
Alignment:
Q  596 gttgcaagcgacaatcctatcaaa-taagggttttcggaatccaccagaatt 646  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  50857531 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaatt 50857582  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 817 - 1004
Target Start/End: Complemental strand, 49043808 - 49043619
Alignment:
Q  817 cctttagacgatctcgaatgactaaattcacccctacatcatggcaaatccatgtgttttactcgtgaggtctggggcttttcg-aaaggtataattcga 915  Q
    |||| |||||| ||| |||||||||||||| |||||| |||||   || | ||| ||||| |||||||| || |  ||||| || ||||||||||||||     
T  49043808 ccttcagacgacctcaaatgactaaattcatccctacttcatgatgaagcgatgagttttgctcgtgagatccgatgctttccgaaaaggtataattcgg 49043709  T
Q  916 gtcaatccaacaccgaatgtcaaatctacactatttcaagtgaacctttcttgc--gctcacttcatcttcgatacgcgctgccaatttgt 1004  Q
    |||| || ||||||| |||  |||| | ||| |||   | ||||||||||||||  || ||||||||||| ||||||| | ||||||||||    
T  49043708 gtcattctaacaccggatgcaaaatttgcaccattctgaatgaacctttcttgcatgc-cacttcatctttgatacgcaccgccaatttgt 49043619  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 597 - 646
Target Start/End: Complemental strand, 40804660 - 40804611
Alignment:
Q  597 ttgcaagcgacaatcctatcaaataagggttttcggaatccaccagaatt 646  Q
    ||||||||||||| ||||||||||| |||||| |  ||||||||||||||    
T  40804660 ttgcaagcgacaaacctatcaaatacgggtttccaaaatccaccagaatt 40804611  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 598 - 655
Target Start/End: Complemental strand, 42646674 - 42646617
Alignment:
Q  598 tgcaagcgacaatcctatcaaataagggttttcggaatccaccagaattaagaaaagt 655  Q
    ||||| |||||| |||||||||||||||||| | |||||||||| |||| | ||||||    
T  42646674 tgcaaacgacaaacctatcaaataagggtttccagaatccaccaaaattgaaaaaagt 42646617  T

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Target: scaffold0154 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 615 - 668
Target Start/End: Original strand, 28709 - 28762
Alignment:
Q  615 tcaaataagggttttcggaatccaccagaattaagaaaagttatcgataatttt 668  Q
    |||||||||||||| ||||||| ||||||||| ||||||||| |||||||||||    
T  28709 tcaaataagggtttccggaatctaccagaattgagaaaagttctcgataatttt 28762  T

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Target: scaffold0154; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 901 - 947
Target Start/End: Original strand, 29062 - 29108
Alignment:
Q  901 aaaggtataattcgagtcaatccaacaccgaatgtcaaatctacact 947  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  29062 aaaggtataattcgagttaatccaacaccggatgtcaaatctgcact 29108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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