View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4654-Insertion-6 (Length: 803)
Name: NF4654-Insertion-6
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654-Insertion-6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 409 - 803
Target Start/End: Original strand, 45318368 - 45318762
Alignment:
| Q |
409 |
catagagagtggacggaattgtaatttcttcggtcctttctttacacttgttaattaatacgtcnnnnnnnaagggactaattaattaataagtcnnnnn |
508 |
Q |
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| T |
45318368 |
catagagagtggacggaattgtaatttcttcagtcctttctttacacttgttaattaatacgtctttttttaagggactaattaattaataagtcttttt |
45318467 |
T |
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| Q |
509 |
nnaagaatctaattaataagtcttattctcaactgaagaagtatacatttcttttacttctgaaaataatggttatttcttaattttcaaaacaattata |
608 |
Q |
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| T |
45318468 |
ttaagaatctaattaataagtcttattctcaactgaagaagtatacatttcttttacttctgaaaataatagttatttcttaattttcaaaacaattata |
45318567 |
T |
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| Q |
609 |
tatgtaaagatttatatattcttaagtagattatgtcattatcattttattttataactatgccttctagatttgatgctaaagtttaattccatgtttc |
708 |
Q |
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| T |
45318568 |
tatgtaaagatttatatattcttaagtagattatgtcatcatcattttattttataattatgccttctagattttatgctaaagtttaattccatgtttc |
45318667 |
T |
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| Q |
709 |
atctctacttgtagaaacaggtaataaagacgaaaagtgtggcattcatgccgctaaatttgtctttctttttgaccttaaatgctattgtgtgg |
803 |
Q |
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| T |
45318668 |
atctctacttgtagaaacaggtaataaagacgaaaagtgtagcattcatgccgctaaatttgtctttctttttgaccttaaatgctattgtgtgg |
45318762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 10 - 284
Target Start/End: Original strand, 45317910 - 45318184
Alignment:
| Q |
10 |
tgttaattttgtttaatgtgtatgcagctttcgaccatcaagcttcttttcttaactgtgtgtggatatggtacgatggttattttaaccacatacctaa |
109 |
Q |
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| T |
45317910 |
tgttaattttgtttaatgtgtatgcagctttcgaccatcaagcttcttttcttaactgtgtgtggatatggtacgatggttattttaaccacatacctaa |
45318009 |
T |
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| Q |
110 |
caaagggatctaaacgtctttctattattggatggatatgtatggtttttaacatatgtgtatttgcttctcctctcttcattttggtgagaatttgata |
209 |
Q |
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| T |
45318010 |
caaagggatccaaacgtctttctattattggatggatatgtatggtttttaacatatgtgtatttgcttctcctctctttattttggtgagaatttgata |
45318109 |
T |
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| Q |
210 |
tcatttcttaacttttatgttttggccatttgttttacggtagttaatagagtcagtcatgctaacaacctgacc |
284 |
Q |
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| T |
45318110 |
tcatttcttaacttttatgttttggccatttgttttacggtagttaatagagtcagtcatgctaacaacctgacc |
45318184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 40404829 - 40404908
Alignment:
| Q |
110 |
caaagggatctaaacgtctttctattattggatggatatgtatggtttttaacatatgtgtatttgcttctcctctcttc |
189 |
Q |
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| T |
40404829 |
caaagggagcaaaacgtcttgctatcattggatggatttgccttgttttcaacataagtgtatttgctgcacctctcttc |
40404908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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