View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4654-Insertion-8 (Length: 696)
Name: NF4654-Insertion-8
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654-Insertion-8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 339 - 696
Target Start/End: Complemental strand, 47829012 - 47828655
Alignment:
| Q |
339 |
tctctgcaaatatatcannnnnnnattttagaagaaaaattattaattggcttctgattattttttccatgataactagaaaacccaattagtaatttcc |
438 |
Q |
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| T |
47829012 |
tctctgcaaatatatcatttttttattttagaagaaaaattattaattggcttctgattattctttccatgataactagaaaagccaattagtaatttcc |
47828913 |
T |
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| Q |
439 |
cttctaccgtagtgataataattggtttagtactagtgacaagttgttgtttaatagaaaacatggttgaatttgaatctgtaaagatcttaatccttcg |
538 |
Q |
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| T |
47828912 |
cttctaccgtagtgataataattggtttagtactagtgacaagttgttgtttaatagaaaacatggttgaatttgaatctgtaaagatcttaatccttcg |
47828813 |
T |
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| Q |
539 |
cattgcaacttgcaaagcttcttgagacatattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaaa |
638 |
Q |
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| T |
47828812 |
cattgcaacttgcaaagcttcttgagacatattagcaaagcaaatcctaaaccacccaggttcagaacaatgacaagaagatccaggagatatattcaaa |
47828713 |
T |
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| Q |
639 |
ccaatttggtaaagaatccttttccaaagctcattctctgcctcaaaagttgcagaac |
696 |
Q |
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| T |
47828712 |
ccaatttggtaaagaatccttttccaaagctcattctctgcctcaaaagttgcagaac |
47828655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 47829411 - 47829079
Alignment:
| Q |
13 |
aacccaaaaggcgtcaacataagatccggtggtggaagcaatagagaaaaggttaggatcttggaaaaatataatcggtgtgtgagtttggggagaagag |
112 |
Q |
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| T |
47829411 |
aacccaaaaggcgtcaacataagatccggtggtggaagcaatagagaaaaggttaggatcttggaaaaatataatcggtgtgtgagtttggggagaagag |
47829312 |
T |
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| Q |
113 |
tagtgttgattaattccgttctcacttctattctcatattctattggtgtgcaaagcactcaaagccatagaaccaaataatacacgagcaaattacgtt |
212 |
Q |
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| T |
47829311 |
tagtgttgattaattccgttctcacttctattctcatattctattggtgtgcaaagcactcaaagccatagaaccaaataatacacaagcaaattacgtt |
47829212 |
T |
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| Q |
213 |
ttattttctttccataaacagtagtagatacaatacaatcaaattaaaatacataaactaagcccctggaaacattcattaatgttaacaat---aatat |
309 |
Q |
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| T |
47829211 |
ttattttctttccataaacagtagtagatacaatacaatcaaattaaaatacataaactaagcccctggaaacattcattaatgttaacaataataatat |
47829112 |
T |
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| Q |
310 |
acatatatatgtgcaagtagtttcttccttctc |
342 |
Q |
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| T |
47829111 |
acatatatatgtgcaagtagtttcttccttctc |
47829079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 637
Target Start/End: Original strand, 42788822 - 42788893
Alignment:
| Q |
566 |
catattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaa |
637 |
Q |
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| T |
42788822 |
catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa |
42788893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 637
Target Start/End: Original strand, 42798360 - 42798431
Alignment:
| Q |
566 |
catattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaa |
637 |
Q |
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| T |
42798360 |
catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa |
42798431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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