View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4654_high_16 (Length: 259)

Name: NF4654_high_16
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4654_high_16
NF4654_high_16
[»] chr8 (12 HSPs)
chr8 (19-242)||(41841212-41841435)
chr8 (23-242)||(42220909-42221124)
chr8 (19-144)||(44878905-44879030)
chr8 (19-144)||(44880891-44881016)
chr8 (20-143)||(42555144-42555267)
chr8 (19-142)||(42091945-42092067)
chr8 (19-73)||(40054305-40054359)
chr8 (19-70)||(10944459-10944510)
chr8 (19-64)||(37679757-37679802)
chr8 (19-66)||(37682057-37682104)
chr8 (23-69)||(42872514-42872560)
chr8 (19-143)||(44582768-44582900)
[»] chr4 (11 HSPs)
chr4 (19-228)||(11652452-11652661)
chr4 (19-242)||(3461202-3461423)
chr4 (19-99)||(50077259-50077339)
chr4 (19-99)||(49106589-49106669)
chr4 (19-99)||(49108693-49108773)
chr4 (19-65)||(26984727-26984773)
chr4 (19-65)||(26998800-26998846)
chr4 (19-65)||(48205832-48205878)
chr4 (20-59)||(26982549-26982588)
chr4 (25-61)||(34481155-34481191)
chr4 (31-99)||(49533697-49533764)
[»] chr2 (21 HSPs)
chr2 (19-242)||(2841077-2841301)
chr2 (19-142)||(9026710-9026833)
chr2 (19-142)||(9023371-9023494)
chr2 (19-123)||(9031996-9032100)
chr2 (19-122)||(8973256-8973359)
chr2 (19-142)||(8984617-8984740)
chr2 (19-99)||(30731975-30732055)
chr2 (19-142)||(9020771-9020894)
chr2 (19-141)||(9016418-9016540)
chr2 (19-98)||(8979290-8979369)
chr2 (19-142)||(9030322-9030445)
chr2 (19-143)||(8988378-8988502)
chr2 (19-99)||(43850016-43850096)
chr2 (19-69)||(9008018-9008068)
chr2 (19-69)||(32918077-32918127)
chr2 (19-123)||(8992091-8992195)
chr2 (19-123)||(30733932-30734035)
chr2 (19-64)||(19232459-19232504)
chr2 (37-127)||(8975634-8975724)
chr2 (28-63)||(39814115-39814150)
chr2 (19-59)||(10763938-10763978)
[»] chr5 (4 HSPs)
chr5 (19-242)||(1716512-1716731)
chr5 (19-115)||(3643591-3643687)
chr5 (19-66)||(7524968-7525015)
chr5 (19-62)||(4103249-4103292)
[»] chr1 (21 HSPs)
chr1 (19-142)||(33987994-33988117)
chr1 (19-116)||(28366259-28366356)
chr1 (19-99)||(14669769-14669849)
chr1 (19-99)||(14706055-14706135)
chr1 (19-123)||(14708521-14708625)
chr1 (19-78)||(14654400-14654459)
chr1 (19-78)||(14664191-14664250)
chr1 (19-77)||(14716280-14716338)
chr1 (19-99)||(14674448-14674528)
chr1 (19-123)||(14676575-14676679)
chr1 (19-99)||(14679826-14679906)
chr1 (19-99)||(14681566-14681646)
chr1 (19-123)||(14683693-14683797)
chr1 (19-70)||(14667171-14667222)
chr1 (19-69)||(38175590-38175640)
chr1 (19-66)||(14652525-14652572)
chr1 (19-66)||(14662316-14662363)
chr1 (19-63)||(11872541-11872585)
chr1 (19-60)||(37422175-37422216)
chr1 (25-69)||(28698550-28698594)
chr1 (188-221)||(28366420-28366453)
[»] chr6 (4 HSPs)
chr6 (19-99)||(10791712-10791792)
chr6 (19-99)||(10795950-10796030)
chr6 (19-66)||(30521242-30521289)
chr6 (19-64)||(8875691-8875736)
[»] chr3 (1 HSPs)
chr3 (19-64)||(15758563-15758608)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 41841212 - 41841435
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841212 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggttggcttctgcttttatatctcacatccactcacttgct 41841311  T
Q  119 ttcttaaacgagcgatgtgggactaaacttagacaacaacttgggactcaatgattcttgtacgcatggcatggccaacagagaccaaattccaagcaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41841312 ttcttaaacgagcgatgtgggactaaacttagacaacaacttgggactcaatggttcttgtacgcatggcatggccaacagagaccaaattccaagcaaa 41841411  T
Q  219 ggatacgtgatttgagcttccaac 242  Q
    ||||||||||||||||||||||||    
T  41841412 ggatacgtgatttgagcttccaac 41841435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 42220909 - 42221124
Alignment:
Q  23 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgctttct 122  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||| |||| |  | | || ||||||||||||||||| |||||| ||||| ||||||    
T  42220909 agatactacacttgatcttagccaaaagaccgaaaaatgtatgagttgaaagctatgctcgcctctgcttttatatctcatatccac-cacttactttct 42221007  T
Q  123 taaacgagcgatgtgggactaaacttagacaacaacttgggactcaatgattcttgta-cgcatggcatggccaacagagaccaaattccaagcaaagga 221  Q
      ||| |||||||||||||||   || | ||| | |||||||||   |  ||||||||  ||||| ||||||||||| ||||||| |||||| |||||||    
T  42221008 agaactagcgatgtgggacta---tttg-caatagcttgggactagcttgttcttgtatggcatgacatggccaacaaagaccaatttccaaacaaagga 42221103  T
Q  222 tacgtgatttgagcttccaac 242  Q
    ||  |||||||||||||||||    
T  42221104 tatatgatttgagcttccaac 42221124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 44879030 - 44878905
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| | || |||||||||||||| | | ||||||| ||  ||    
T  44879030 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaatgttgggctcgcctctgcttttatatccctcgtccactctctatct 44878931  T
Q  119 ttcttaaacgagcgatgtgggactaa 144  Q
     |||| ||| | ||||||||||||||    
T  44878930 ctcttgaacaaacgatgtgggactaa 44878905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 44880891 - 44881016
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| | || |||||||||||||| | | ||||||| ||  ||    
T  44880891 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaatgttgggctcgcctctgcttttatatccctcgtccactctctatct 44880990  T
Q  119 ttcttaaacgagcgatgtgggactaa 144  Q
     |||| ||| | ||||||||||||||    
T  44880991 ctcttgaacaaacgatgtgggactaa 44881016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 42555144 - 42555267
Alignment:
Q  20 aacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgctt 119  Q
    ||||||| || ||||||||||||||||||||  | ||||||||||||||| |||| || | |  |||| | |||||||| ||||||||||||||||||||    
T  42555144 aacagattctgcacttgatcttagccaaaagatcaagaaaggtatgagttgaaagttgagctaccttcaggttttatatatcacatccactcacttgctt 42555243  T
Q  120 tcttaaacgagcgatgtgggacta 143  Q
    |||||||| | |||||||||||||    
T  42555244 tcttaaactatcgatgtgggacta 42555267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 42092067 - 42091945
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||| ||| ||||||| || ||||| |||||||  ||||||||||||||| ||||||| ||| ||||||| ||||||||||||  |||||||| |||||    
T  42092067 gaacaaatattacacttaattttagc-aaaaggcaaagaaaggtatgagtttaaagatgagtttgcttctggttttatatctcaggtccactcagttgct 42091969  T
Q  119 ttcttaaacgagcgatgtgggact 142  Q
    ||||| ||| | ||||||||||||    
T  42091968 ttcttgaactaccgatgtgggact 42091945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 40054359 - 40054305
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaa 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40054359 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgaattaaaa 40054305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 10944459 - 10944510
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtta 70  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10944459 gaacagatactacacttgatcttagccaaaaggtcgagaaaggtatgagtta 10944510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 37679802 - 37679757
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtat 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37679802 gaacagatactacacttgatcttagccaaaaggccgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 37682104 - 37682057
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 66  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37682104 gaacagatactacacttgatcttagccaaaaggccgagaaatgtatga 37682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 42872514 - 42872560
Alignment:
Q  23 agatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 69  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggtatgagtt 42872560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 44582900 - 44582768
Alignment:
Q  19 gaacagatactacacttgatcttagcc--------aaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccact 110  Q
    |||||||||||||||||||||||||||        |||| ||||||||| |||||| || |||||  || | || || ||||||||||| ||||| || |    
T  44582900 gaacagatactacacttgatcttagccaaaaaccaaaaaagccgagaaatgtatgaattgaaagagagggtcgcctcggcttttatatcacacattcatt 44582801  T
Q  111 cacttgctttcttaaacgagcgatgtgggacta 143  Q
    ||||| || |||||||| | |||||||||||||    
T  44582800 cactttctctcttaaacaaacgatgtgggacta 44582768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 11652452 - 11652661
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11652452 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctggttttatatctcacatccactcacttgct 11652551  T
Q  119 ttcttaaacgagcgatgtgggactaaacttagacaacaacttgggactcaatgattcttgtacgcatggcatggccaacagagaccaaattccaagcaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||    
T  11652552 ttcttaaacgagcgatgtgggactaaacttagacaacaacttgtgactcaatggttcttgtacgcatggcatagccaacagagaccaatttccaagcaaa 11652651  T
Q  219 ggatacgtga 228  Q
    ||||||||||    
T  11652652 ggatacgtga 11652661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 3461202 - 3461423
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||   | | |||| || ||||||||||| ||||||||||||||||    
T  3461202 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgaattgaaagagatgctcgcttatggttttatatctcccatccactcacttgct 3461301  T
Q  119 ttcttaaacgagcgatgtgggactaaacttagacaacaacttgggactcaatgattcttgtacgcatggcatggccaacagagaccaaattccaagcaaa 218  Q
    |||||  || |||||||||||||||||||||||||||||||||||||||  |  |||||| ||||||||||| ||||||||||||||| || ||||||||    
T  3461302 ttcttccacaagcgatgtgggactaaacttagacaacaacttgggactc--tagttcttgcacgcatggcatagccaacagagaccaactttcaagcaaa 3461399  T
Q  219 ggatacgtgatttgagcttccaac 242  Q
    |||||| |||||||||||||||||    
T  3461400 ggatacatgatttgagcttccaac 3461423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 50077259 - 50077339
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||    
T  50077259 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatc 50077339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 49106589 - 49106669
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   || |||||||||||||||||||    
T  49106589 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagggtggctggcttctgcttttatatc 49106669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 49108693 - 49108773
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || ||||||||| |||||||||    
T  49108693 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatataggctggcttctgattttatatc 49108773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 26984727 - 26984773
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26984727 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 26984773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 26998800 - 26998846
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26998800 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 26998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 48205878 - 48205832
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 65  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  48205878 gaacagatactacacttaatcttagctaaaaggccgagaaaggtatg 48205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 26982588 - 26982549
Alignment:
Q  20 aacagatactacacttgatcttagccaaaaggccgagaaa 59  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  26982588 aacagatgctacacttgatcttagccaagaggccgagaaa 26982549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 34481155 - 34481191
Alignment:
Q  25 atactacacttgatcttagccaaaaggccgagaaagg 61  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34481155 atactacactcgatcttagccaaaaggctgagaaagg 34481191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 49533697 - 49533764
Alignment:
Q  31 cacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    |||||||||||||||||  |||||||||||||||| |||  || | ||| ||||||||| |||||||||    
T  49533697 cacttgatcttagccaag-ggccgagaaaggtatgggttggaataagggctggcttctggttttatatc 49533764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 2841077 - 2841301
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgag--ttaaaagatgggttggcttctgcttttatatctcacatccactcacttg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||| | || |||||||||||||||||||||||||||||||    
T  2841077 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagagttaaaa-aggggctcgcgtctgcttttatatctcacatccactcacttg 2841175  T
Q  117 ctttcttaaacgagcgatgtgggactaaacttagacaacaacttgggactcaatgattcttgtacgcatggcatggccaacagagaccaaattccaagca 216  Q
    ||||||| ||| | ||||||||||||||||||| |||| ||||||||||||     |||||||||||||||||||||||||| ||||||| |||||||||    
T  2841176 ctttcttcaacaaccgatgtgggactaaacttaaacaataacttgggactcgcctgttcttgtacgcatggcatggccaacaaagaccaatttccaagca 2841275  T
Q  217 aaggatacgtgatttgagcttccaac 242  Q
    |||||| |||||||||||||||||||    
T  2841276 aaggatgcgtgatttgagcttccaac 2841301  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 9026833 - 9026710
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||| |||||||||||  |||||||  |||||||||    
T  9026833 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaattcgcttatgcttttatataccacatcccttcacttgct 9026734  T
Q  119 ttcttaaacgagcgatgtgggact 142  Q
    ||||| ||| | |||| |||||||    
T  9026733 ttcttgaacaaccgatatgggact 9026710  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 9023494 - 9023371
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  | |||| ||||||||||| |||||||   ||||||| |    
T  9023494 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagttggactcgcttatgcttttatatatcacatctcttcacttgat 9023395  T
Q  119 ttcttaaacgagcgatgtgggact 142  Q
    ||||| ||| | ||||||||||||    
T  9023394 ttcttgaacaaccgatgtgggact 9023371  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 9032100 - 9031996
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||  || |||| |||||||||||  |||||||  |||||||||    
T  9032100 gaacagatactacacttgatcttaaccaaaaggccgagaaaggtatgagttgaaagatgaattcgcttatgcttttatataccacatcccttcacttgct 9032001  T
Q  119 ttctt 123  Q
    |||||    
T  9032000 ttctt 9031996  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 8973359 - 8973256
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   | |||| ||||||||||| ||||||||  |||||| ||    
T  8973359 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaactcgcttatgcttttatatatcacatcccttcacttact 8973260  T
Q  119 ttct 122  Q
    ||||    
T  8973259 ttct 8973256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 8984740 - 8984617
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||   | |||| ||||||||||| ||||||||  ||||||| |    
T  8984740 gaacaaatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatatgaacttgcttatgcttttatatatcacatcccttcacttgtt 8984641  T
Q  119 ttcttaaacgagcgatgtgggact 142  Q
    ||||| ||| | ||||||||||||    
T  8984640 ttcttgaacaaccgatgtgggact 8984617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 30732055 - 30731975
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | | |||||||||||||    
T  30732055 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatc 30731975  T

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Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 9020894 - 9020771
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||   | |||| || |||||||| ||||||||| |||||||||    
T  9020894 gaacagatactacacttgatcttagccaaaaggccgagaaatgtatgaattgaaagatgaactcgcttatggttttatatatcacatccattcacttgct 9020795  T
Q  119 ttcttaaacgagcgatgtgggact 142  Q
    ||| | ||| | |||||| |||||    
T  9020794 ttcatgaacaaccgatgtaggact 9020771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 9016540 - 9016418
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    |||||||||||||| |||||||||||||||||| |||  ||||||||||||||||||||   | |||| ||||||||||| ||||||||  |||||||||    
T  9016540 gaacagatactacatttgatcttagccaaaaggtcgaataaggtatgagttaaaagatgaactcgcttatgcttttatatatcacatcctttcacttgct 9016441  T
Q  119 ttcttaaacgagcgatgtgggac 141  Q
    ||||| ||| |  ||||||||||    
T  9016440 ttcttgaacaactgatgtgggac 9016418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 8979369 - 8979290
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   | |||| |||||||||||    
T  8979369 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaacttgcttatgcttttatat 8979290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 9030445 - 9030322
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||| |||||||   | |||| ||||||||||| ||||||||  ||||||||     
T  9030445 gaacagatactacacttgatcttagccaaaaggccaagaaaaatatgagttgaaagatgaacttgcttatgcttttatatatcacatcccttcacttgca 9030346  T
Q  119 ttcttaaacgagcgatgtgggact 142  Q
    ||||| |||   ||||||||||||    
T  9030345 ttcttgaacagtcgatgtgggact 9030322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 8988502 - 8988378
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||| ||||||||||||||||| ||||||||||| |||| ||||| |||| |||||||   | |||| ||||||||||| ||||||||  |||||||||    
T  8988502 gaacaaatactacacttgatcttcgccaaaaggccaagaatggtataagttgaaagatgaactcgcttatgcttttatatatcacatcccttcacttgct 8988403  T
Q  119 ttcttaaacgagcgatgtgggacta 143  Q
    ||||| |||   |||||||||||||    
T  8988402 ttcttgaacagtcgatgtgggacta 8988378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 43850096 - 43850016
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |  || ||||||||||||||    
T  43850096 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaataaggctacgcatctgcttttatatc 43850016  T

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Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 9008068 - 9008018
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008068 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 9008018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 32918127 - 32918077
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918127 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 32918077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 8992195 - 8992091
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||| |   | |||| ||||||||||| ||||||||  |||||| ||    
T  8992195 gaacatatactacacttgatcttagccaaaagactgagaaaggcatgagttaaaagacgaactcgcttatgcttttatatatcacatcccttcacttact 8992096  T
Q  119 ttctt 123  Q
    |||||    
T  8992095 ttctt 8992091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 30734035 - 30733932
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| | |  || |||||||||||||| ||||   |||||||| |    
T  30734035 gaacagatactacacttgatcttagccaaaaggccgagaaaggtataagttacaacatgagat-cctgctgcttttatatctgacatgttctcacttgtt 30733937  T
Q  119 ttctt 123  Q
    |||||    
T  30733936 ttctt 30733932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 19232459 - 19232504
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtat 64  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  19232459 gaacagatattacacttgatcttagccaaaaggccgagaaaggtat 19232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 8975724 - 8975634
Alignment:
Q  37 atcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgctttcttaaac 127  Q
    ||||||||||||||||  |||||  |||||||| |||| |||  | |||| ||||||||||| ||||||||  ||||||| ||||||||||    
T  8975724 atcttagccaaaaggcttagaaaaatatgagttgaaagttggactcgcttatgcttttatatatcacatcccttcacttgatttcttaaac 8975634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 39814150 - 39814115
Alignment:
Q  28 ctacacttgatcttagccaaaaggccgagaaaggta 63  Q
    |||||||||||| |||||||||||||||||||||||    
T  39814150 ctacacttgatcatagccaaaaggccgagaaaggta 39814115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 10763938 - 10763978
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaa 59  Q
    ||||| ||||||||||||||||||| |||||| ||||||||    
T  10763938 gaacatatactacacttgatcttagtcaaaagaccgagaaa 10763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 1716512 - 1716731
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||  ||||||||||||||||||||||||||||    
T  1716512 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgcactcgcttcttattttatatctcacatccactcacttgct 1716611  T
Q  119 ttcttaaacgagcgatgtgggactaaacttagacaacaacttgggactcaatgattcttgta-cgcatggcatggccaacagagaccaaattccaagcaa 217  Q
    ||| | ||| |||||||||||||||   || | ||| | | |||||||   |   |||||||  ||||||||||||||||| ||||||| |||||| |||    
T  1716612 ttc-tgaactagcgatgtgggacta---tttg-caatagcctgggactagcttgctcttgtatggcatggcatggccaacaaagaccaatttccaaacaa 1716706  T
Q  218 aggatacgtgatttgagcttccaac 242  Q
    |||||||||||||||||||||||||    
T  1716707 aggatacgtgatttgagcttccaac 1716731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 3643687 - 3643591
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcactt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||   |  | ||||||| ||||||||| |||||||||||||||    
T  3643687 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgaatttaaagtaagtctcgcttctgtttttatatcccacatccactcactt 3643591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 7525015 - 7524968
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7525015 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 7524968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 4103292 - 4103249
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggt 62  Q
    |||||||||||||||||||||||| |||||| || |||||||||    
T  4103292 gaacagatactacacttgatcttaaccaaaatgctgagaaaggt 4103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 33988117 - 33987994
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |  ||| ||||||||||| |||| |||  |||||||||    
T  33988117 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactcacttatgcttttatatatcacctcccttcacttgct 33988018  T
Q  119 ttcttaaacgagcgatgtgggact 142  Q
    ||||| ||| | ||||||||||||    
T  33988017 ttcttgaacaaccgatgtgggact 33987994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 28366259 - 28366356
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||   ||| |||||||||||    
T  28366259 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaggggttcgcatctgcttttatattcaacacccactcacttg 28366356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 14669769 - 14669849
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | | |||||||||||||    
T  14669769 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatc 14669849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 14706135 - 14706055
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | | |||||||||||||    
T  14706135 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcggtgctgcttttatatc 14706055  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 14708625 - 14708521
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |  ||  ||||||||||||| ||||   |||| |||||    
T  14708625 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcactagtgcttttatatctgacattttctcaattgct 14708526  T
Q  119 ttctt 123  Q
    |||||    
T  14708525 ttctt 14708521  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 14654400 - 14654459
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgg 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14654400 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgg 14654459  T

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Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 14664191 - 14664250
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgg 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14664191 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgg 14664250  T

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Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 14716338 - 14716280
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatg 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14716338 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatg 14716280  T

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Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 14674528 - 14674448
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| || | | | |||||||||||||    
T  14674528 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttggaagattggctaggtgctgcttttatatc 14674448  T

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Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 14676679 - 14676575
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  | ||| | ||||||||| |  |||||  |||| |||||    
T  14676679 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatatggactagctgccgcttttataacagacatcttctcagttgct 14676580  T
Q  119 ttctt 123  Q
    |||||    
T  14676579 ttctt 14676575  T

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Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 14679906 - 14679826
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| || | | | |||||||||||||    
T  14679906 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttggaagattggctaggtgctgcttttatatc 14679826  T

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Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 14681646 - 14681566
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| | | | |||||||||||||    
T  14681646 gaacagatactacacttgatcttagccaaaaggccgagaaaggtataagttgaaaaatgggctaggtgctgcttttatatc 14681566  T

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Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 14683797 - 14683693
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatctcacatccactcacttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  | ||| | ||||||||| |  |||||  |||| |||||    
T  14683797 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatatggactagctgccgcttttataacagacatcttctcagttgct 14683698  T
Q  119 ttctt 123  Q
    |||||    
T  14683697 ttctt 14683693  T

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Target: chr1; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 14667171 - 14667222
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtta 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14667171 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtta 14667222  T

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Target: chr1; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 38175590 - 38175640
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175590 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 38175640  T

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Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 14652572 - 14652525
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652572 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14652525  T

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Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 14662363 - 14662316
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662363 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14662316  T

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Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 11872541 - 11872585
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggta 63  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||    
T  11872541 gaacagatagtacacttgatcttagtcaaaaggccgagaaaggta 11872585  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 37422216 - 37422175
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaag 60  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  37422216 gaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 28698594 - 28698550
Alignment:
Q  25 atactacacttgatcttagccaaaaggccgagaaaggtatgagtt 69  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||    
T  28698594 atactacatttgatcttagccaaaagaccgagaaatgtatgagtt 28698550  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 28366420 - 28366453
Alignment:
Q  188 catggccaacagagaccaaattccaagcaaagga 221  Q
    ||||||||||||||||||| ||||||||||||||    
T  28366420 catggccaacagagaccaatttccaagcaaagga 28366453  T

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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 10791712 - 10791792
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  10791712 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagttggcttctgcttttatatc 10791792  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 10795950 - 10796030
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctgcttttatatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||    
T  10795950 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatc 10796030  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 30521289 - 30521242
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 66  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  30521289 gaacagatactacacttgatctcagccaaaaggtcgagaaaggtatga 30521242  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 8875736 - 8875691
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtat 64  Q
    ||||||||| |||||||||||||||||||||||||| |||| ||||    
T  8875736 gaacagatattacacttgatcttagccaaaaggccgggaaatgtat 8875691  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 15758563 - 15758608
Alignment:
Q  19 gaacagatactacacttgatcttagccaaaaggccgagaaaggtat 64  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||    
T  15758563 gaacagatattacacttgatcttagccaaaaggctgagaaaggtat 15758608  T

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