View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4654_high_7 (Length: 377)
Name: NF4654_high_7
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 175 - 363
Target Start/End: Complemental strand, 27589069 - 27588881
Alignment:
| Q |
175 |
tttagtaatggaaatgaatggagtaaattaaattttgtagtgaccaattcattaagaagatgggaaacggcaaggaacccatacatttcctttcatcgag |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27589069 |
tttagtaatggaaatgaatggagtaaattaaattttgtagtgaccaattcattaagaagatgggaaacggcaaggaacccatacatttcctttcatcgag |
27588970 |
T |
|
| Q |
275 |
atctgcattcacaaatgcaatatatagctatcattcaattttcaaatatttttcctttctttttaatctgatagcatgtctaattcatc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27588969 |
atctgcattcacaaatgcaatatatagctatcattcaattttcaaatatttttcctttctttttaatctgatagcatgtctaattcatc |
27588881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 27589122 - 27589068
Alignment:
| Q |
74 |
caagggacataaaagagaaattaactaaattgttgatttattaaatattaatttt |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27589122 |
caagggacataaaagagaaattaactaaattgttgatttattaaatattaatttt |
27589068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 27589239 - 27589176
Alignment:
| Q |
15 |
atttagtactttatgatatatcaaaatcgcaaattatgaatatttgtccct--attagtgacaa |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27589239 |
atttagtactttatgatatatcaaaatcgcaaattatgaatatttgtcccttcattagtgacaa |
27589176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University